More than 300 homologs were found in PanDaTox collection
for query gene Paes_1929 on replicon NC_011059
Organism: Prosthecochloris aestuarii DSM 271



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  100 
 
 
425 aa  881    Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  77.88 
 
 
425 aa  704    Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  70.21 
 
 
424 aa  619  1e-176  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  68.32 
 
 
424 aa  620  1e-176  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  67.85 
 
 
424 aa  604  9.999999999999999e-173  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  66.98 
 
 
426 aa  595  1e-169  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  43.13 
 
 
439 aa  350  4e-95  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  35.24 
 
 
433 aa  288  2e-76  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  35.45 
 
 
430 aa  273  5.000000000000001e-72  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  35.55 
 
 
433 aa  267  2.9999999999999995e-70  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  35.87 
 
 
429 aa  265  1e-69  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  35.34 
 
 
430 aa  259  5.0000000000000005e-68  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  33.1 
 
 
421 aa  257  3e-67  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_006368  lpp2532  hypothetical protein  33.49 
 
 
430 aa  254  2.0000000000000002e-66  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  34.2 
 
 
428 aa  254  3e-66  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_006369  lpl2387  hypothetical protein  33.25 
 
 
430 aa  250  3e-65  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  34.2 
 
 
431 aa  249  5e-65  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  33.02 
 
 
433 aa  249  7e-65  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  33.57 
 
 
428 aa  244  1.9999999999999999e-63  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  32.86 
 
 
430 aa  244  1.9999999999999999e-63  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  32.86 
 
 
430 aa  244  1.9999999999999999e-63  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  32.86 
 
 
430 aa  244  1.9999999999999999e-63  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  32.29 
 
 
431 aa  241  2.9999999999999997e-62  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  30.99 
 
 
432 aa  239  8e-62  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  30.99 
 
 
422 aa  239  9e-62  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  34.51 
 
 
432 aa  237  3e-61  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_012560  Avin_04400  Soluble nickel-dependent hydrogenase, large subunit, HoxH  32.13 
 
 
419 aa  234  3e-60  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  35.61 
 
 
425 aa  233  4.0000000000000004e-60  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  33.49 
 
 
432 aa  230  3e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  32.46 
 
 
423 aa  198  1.0000000000000001e-49  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  31.6 
 
 
423 aa  191  2e-47  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  27.47 
 
 
473 aa  187  2e-46  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  30.22 
 
 
479 aa  186  8e-46  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  27.72 
 
 
473 aa  186  9e-46  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  31 
 
 
482 aa  184  2.0000000000000003e-45  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  29.75 
 
 
455 aa  178  1e-43  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  30.8 
 
 
474 aa  177  3e-43  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  30.8 
 
 
474 aa  177  3e-43  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  29.61 
 
 
487 aa  175  9.999999999999999e-43  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  29.87 
 
 
473 aa  175  9.999999999999999e-43  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  28.29 
 
 
475 aa  175  9.999999999999999e-43  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  28.03 
 
 
494 aa  175  1.9999999999999998e-42  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  29 
 
 
487 aa  174  1.9999999999999998e-42  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  31.35 
 
 
449 aa  174  1.9999999999999998e-42  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  30.58 
 
 
473 aa  174  1.9999999999999998e-42  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  31.04 
 
 
472 aa  174  2.9999999999999996e-42  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  30.75 
 
 
488 aa  172  6.999999999999999e-42  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  28.03 
 
 
504 aa  172  9e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  30.41 
 
 
473 aa  172  1e-41  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  31.97 
 
 
485 aa  172  1e-41  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  29.57 
 
 
476 aa  171  2e-41  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  28.94 
 
 
509 aa  171  3e-41  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  29.89 
 
 
479 aa  171  3e-41  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  29.44 
 
 
479 aa  170  4e-41  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  30.17 
 
 
474 aa  170  5e-41  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  27.68 
 
 
499 aa  169  9e-41  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  28.09 
 
 
493 aa  167  2e-40  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  29.87 
 
 
482 aa  167  2.9999999999999998e-40  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  29.56 
 
 
471 aa  167  2.9999999999999998e-40  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  29.84 
 
 
474 aa  167  2.9999999999999998e-40  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  30.13 
 
 
479 aa  167  4e-40  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  28.73 
 
 
507 aa  166  5e-40  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  29.65 
 
 
471 aa  166  6.9999999999999995e-40  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  28.63 
 
 
486 aa  166  8e-40  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  29.69 
 
 
476 aa  166  9e-40  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  28.76 
 
 
478 aa  165  1.0000000000000001e-39  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  29.23 
 
 
479 aa  164  2.0000000000000002e-39  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  30.69 
 
 
418 aa  163  6e-39  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  29.02 
 
 
473 aa  162  1e-38  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  30.37 
 
 
418 aa  161  2e-38  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  30.45 
 
 
418 aa  160  3e-38  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  28 
 
 
469 aa  160  4e-38  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  25.62 
 
 
504 aa  158  1e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  29.88 
 
 
418 aa  155  1e-36  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  30.26 
 
 
418 aa  155  1e-36  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  29.74 
 
 
449 aa  155  1e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  28.6 
 
 
474 aa  155  1e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  29.53 
 
 
489 aa  155  2e-36  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  27.13 
 
 
488 aa  148  2.0000000000000003e-34  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  26.95 
 
 
487 aa  147  4.0000000000000006e-34  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  28.1 
 
 
475 aa  146  8.000000000000001e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  28.6 
 
 
494 aa  145  1e-33  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  27.98 
 
 
494 aa  145  1e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  27.51 
 
 
488 aa  139  1e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  27.67 
 
 
494 aa  129  1.0000000000000001e-28  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  27.84 
 
 
498 aa  117  3.9999999999999997e-25  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  25.15 
 
 
526 aa  115  1.0000000000000001e-24  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  27.13 
 
 
410 aa  113  7.000000000000001e-24  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  25 
 
 
456 aa  112  9e-24  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  26.12 
 
 
410 aa  112  9e-24  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  22.74 
 
 
481 aa  112  1.0000000000000001e-23  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  24.18 
 
 
526 aa  111  3e-23  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  24.36 
 
 
526 aa  110  4.0000000000000004e-23  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  23.63 
 
 
485 aa  108  2e-22  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  25.27 
 
 
470 aa  103  4e-21  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  23.93 
 
 
455 aa  102  2e-20  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  25.39 
 
 
514 aa  101  3e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_009637  MmarC7_0627  nickel-dependent hydrogenase large subunit  24.46 
 
 
390 aa  101  3e-20  Methanococcus maripaludis C7  Archaea  normal  normal  0.931032 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  22.63 
 
 
458 aa  100  5e-20  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  24.58 
 
 
456 aa  100  7e-20  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
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