| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3539 |
|---|
| Symbol | |
|---|
| ID | 5210517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4433698 |
|---|
| End bp | 4435122 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640597135 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_001277847 |
|---|
| Protein GI | 148657642 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTC ACATCCTGAT CGATCCGGTC ACCCGGATCG AAGGACACGC GAAAATCAGC
ATCCATCTGG ACGACGACGG AAACGTGGCA GAGGCGCGTT TCCATGTGAC TGAGTTTCGC
GGGTTTGAGC GCTTTTGCGA GGGACGACCA TTCTGGGAAA TGCCCGGCAT TACGGCGCGC
ATCTGCGGGA TCTGCCCGGT CAGCCATCTG CTGGCATCGG CGAAGGCAGG TGACGCGATC
CTCTCGGTAG TGATCCCGCC AGCAGCGGAG AAACTGCGCC GCCTGATGAA CCTGGGGCAG
ATCGTGCAAT CGCACGCGCT GAGTTTCTTT CATCTCAGTG CGCCCGATCT GCTGCTCGGT
TTCGACAGCG ATCCCGCCAC GCGCAATGTC TTTGGATTGA TGGCTGCCGA TCCGACGCTG
GCGCGTGCCG GAATACGGCT TCGCCAGCTG GGGCAGGACA TTATTGCTCT GCTCGGCGGC
AGCAAAATCC ATCCGGCGTG GGCTGTGCCG GGCGGTGTCC GCTCTGCGCC GACCGCCGCA
CAACGCGCCG GGATCATTGA GCGCTTGCCC GAAGCGCGCG CCACGGTGCT CGATGCACTA
CGTCGGTTCA AGGCGTTGCT CGACACCCAC GCCGACGAAG TTGCGACATT TGGCAATTTC
CCGTCACTTT TCCTGGGATT GGTAGGACCA AACGGTGAAT GGGAGCACTA CGATGGGCGT
TTGCGTGTGG TTGATTCGGG TGGCGCCATC ATCGCCGATC AGGTTGATCC ATCGCGCTAT
CGCGACATTA TCGCCGAAGC GATCGAGCCG TGGTCATACC TGAAGATGCC GTACTACCGA
CCACGTGGCT ACCCTGGCGG CATGTACCGC GTCGGTCCGC TGGCGCGTCT CAATATCTGC
ACCCGCATCG GCACCCTGCT GGCAGACGCC GAACTGGGGG AGATGCGCCA GCGTGCAGGG
GGTATCGCTA CATCGTCGTT CTACTACCAC TACGCGCGCC TGATCGAGAT TCTGGCGGCG
CTGGAGCGCA TTTCGTTGAT CCTCGACGAT CCTGATCTCG ATTCGCCCCG CCTCCGCGCC
GAAGCGGGAG TCAACCGGTT TGAGGGCGTC GGCGTGAGCG AAGCGCCACG CGGAACCCTC
TTCCACCACT ACACCGTCGA TGCGCACGGC TTGATCCAGC GCGTCAATCT GATTATCGCC
ACGGGACACA ACAATCTGGC GATGAACCGG ACGATTGCCC AAATCGCGCG GCACTTTGTG
CACGGCGATC GGATCGGCGA AGGGGCGTTG AACCGGGTGG AGGCAGGCAT CCGCGCCTAC
GATCCGTGTC TCAGTTGTTC GACGCATGCC GCTGGAACGA TGCCGCTGAC GCTCACACTG
GTCGCCGCTG ATGGTACGGT GCTCGATGAG GTGCGGCGGG GGTGA
|
|---|
| Protein sequence | MTRHILIDPV TRIEGHAKIS IHLDDDGNVA EARFHVTEFR GFERFCEGRP FWEMPGITAR
ICGICPVSHL LASAKAGDAI LSVVIPPAAE KLRRLMNLGQ IVQSHALSFF HLSAPDLLLG
FDSDPATRNV FGLMAADPTL ARAGIRLRQL GQDIIALLGG SKIHPAWAVP GGVRSAPTAA
QRAGIIERLP EARATVLDAL RRFKALLDTH ADEVATFGNF PSLFLGLVGP NGEWEHYDGR
LRVVDSGGAI IADQVDPSRY RDIIAEAIEP WSYLKMPYYR PRGYPGGMYR VGPLARLNIC
TRIGTLLADA ELGEMRQRAG GIATSSFYYH YARLIEILAA LERISLILDD PDLDSPRLRA
EAGVNRFEGV GVSEAPRGTL FHHYTVDAHG LIQRVNLIIA TGHNNLAMNR TIAQIARHFV
HGDRIGEGAL NRVEAGIRAY DPCLSCSTHA AGTMPLTLTL VAADGTVLDE VRRG
|
|---|
| |