| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3972 |
|---|
| Symbol | |
|---|
| ID | 8139346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 4555684 |
|---|
| End bp | 4557105 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644871588 |
|---|
| Product | nickel-dependent hydrogenase large subunit |
|---|
| Protein accession | YP_003023746 |
|---|
| Protein GI | 253702557 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.00000529156 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATGA AGCGAACTTT GAAGATTGAC CCAGTGACCC GGATCGAGGG GCACGCCAAG
GTGTTCATCA ACCTGGACGA GGCCGGGGCG CTGGAAAGCG CGGGGCTCGT GGTGAACGAG
CTGCGCGGCT TCGAGAAGAT CCTGATCGGG ATGGAGGCGG ACCGGATGCC GCACGTGACG
GCGCGCATCT GCGGGGTCTG CCCCACCGCG CACCATATCG CCGCCTGCAA CGCACTGGAC
CACGCGGCAG GGGTCACGCC CCCCCCCGCC GCGCTTCTTC TGCGGGAGCT GATGTATCTC
GGGCACATCA TCCACTCGCA CTCGCTTTCC ATCTTCGTGC TGCAGGGGCC GGACCTGGTG
CTGGGACTCG ACGCGGACCC GGCGATCCGG AACATCGTGG GGATCGTGCA GGCGAACCCG
GAGCTCGCCA AACTCGCCCT GCGCCTGAGG AGCATCGGCC AGAAGATCAA CGAGATGGTG
GGGGGGAGGG GGACGCACCC GGTGACCTCG GTGGCCGGCG GCATCGCCTT CGTGCTCGAC
AAGGAGAAGC TAAAGGCGCT CAAGGAGTGG GTGGACGAGG CGCGGGGGGT GCTGCCGCAG
GTGGTCCCGG CCGTCAAGGG GCTCCTGATG CGGGCCCTGG AAGCGCACCC GGAGATGGGA
GAAAAATGGA TCGTCCCGAG TTTCGGGATG GGTACCGTGC AGGATGGAGC GGTCTCCCTG
ATCTCGGGGG AGCTTCGCGT CATCGACGAC ACCGGCGCCA CCGTTTTGGA GTTCGGGATC
GAGGAGTACG ACCGGTACCT GCGCGAGTCT GTCGTCGAGT GGTCCTACAT GAAGAAGGTG
CAGGTAGAGC TGGACGGCGA GCTGCACGAC TACCGGGTGG GGCCCATGGC GCGGATGAAC
GTGGCGCGCC GTTTCGGGAC CGAAATGGCC GACGCCGAGT ACGCCGAGTT CGCCAGGTTG
GGGGGAGCCC CCTGCCACAC CACCGTGTTC CAGACCTACG CCAAGCTGAT CGAGATCGTC
TGGGCCATCG AGCGGGCGGG GGAGATCCTG CGCGACAAGG CGATCCGCGG GGAGACCCGG
GTCCCGGTCC GCTTCCAGGG GGGGAGGGGG GTGGGGCACG TCGAGGCGCC GCGCGGCACG
CTGATCCACG ACTACCAGAT CGACGAGCGC GGGATCGTGC GGGCGGCGAA CCTGATCGTC
GCCACCCAGC AGAACTACTC GCTCATCAAC CGCTCCATCG AGCAGTCCGC CCAGTCCCAC
GTGATCGACC GCCCCGACGA CCGGGCGCTG ATGAACGCCG TCGAGTTCAG CATCCGCTGC
TACGACCCCT GCCTCTCCTG CGCCACCCAC GCTCTCGGGC GGATGCCGCT GGAGGTAGCG
GTCAGGCGGG GCGCGGAGAC GGTCAAGACC CTTTGGAGGT AA
|
|---|
| Protein sequence | MPMKRTLKID PVTRIEGHAK VFINLDEAGA LESAGLVVNE LRGFEKILIG MEADRMPHVT
ARICGVCPTA HHIAACNALD HAAGVTPPPA ALLLRELMYL GHIIHSHSLS IFVLQGPDLV
LGLDADPAIR NIVGIVQANP ELAKLALRLR SIGQKINEMV GGRGTHPVTS VAGGIAFVLD
KEKLKALKEW VDEARGVLPQ VVPAVKGLLM RALEAHPEMG EKWIVPSFGM GTVQDGAVSL
ISGELRVIDD TGATVLEFGI EEYDRYLRES VVEWSYMKKV QVELDGELHD YRVGPMARMN
VARRFGTEMA DAEYAEFARL GGAPCHTTVF QTYAKLIEIV WAIERAGEIL RDKAIRGETR
VPVRFQGGRG VGHVEAPRGT LIHDYQIDER GIVRAANLIV ATQQNYSLIN RSIEQSAQSH
VIDRPDDRAL MNAVEFSIRC YDPCLSCATH ALGRMPLEVA VRRGAETVKT LWR
|
|---|
| |