| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1459 |
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| Symbol | |
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| ID | 6163313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1538004 |
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| End bp | 1539518 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664213 |
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| Product | nickel-dependent hydrogenase large subunit |
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| Protein accession | YP_001790492 |
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| Protein GI | 171058143 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.720227 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTTG ACCTGGAAAC CGCCGCCGCG CCGCAAGGCC TGCGCCGCGT CGCCATCGAC
CCCGTCTCGC GCGTGGAAGG CCACGGCAAG GTGACGATCC TGCTTGACGA CCACAACCGC
GTGCAGCAGG TGCGGCTGCA CATCGTCGAG TTCCGCGGCT TCGAGAAGTT CATCGAAGGC
CGGCCGTACT GGGAGGTGCC GGTGATGGTG CAGCGCCTGT GCGGCATCTG CCCGGTGTCG
CACCACCTGG CCGCCGCCAA GGCGATGGAC GTGGTGCTCG GCACGCAGCC GATCACGCGC
AGCGCCGAGA AGATCCGCCG GCTGATGCAT TACGGCCAGA CGATGCAGTC GCACGCGCTG
CACTTCTTCC ATTTGTCGTC GCCCGACCTG CTGTTCGGCT TCGACTCGGC GGTGAACCTG
CGCAACATCG TCGGCGTGGT GCAGGCGCAC CCGGACGTCG CCAAGAAGGG CGTGCTGCTG
CGCAAGTTCG GGCAGGAGGT GATCCGCGTC ACCGCCGGTA AGCGCGTGCA CGGCACCGGC
GCGATTCCGG GTGGCATGAA CAAGCATGTC AGCCGTGCCG ACCGCGACAT GCTGCGCCGT
GACGTCGAGC AGATGATCGA GTGGGCGCAG GACGCCGTCA CCATCGCCAA GCAGCTGCAC
GCACAGAACC CGGCGCTGTA CGACAGCTTC GGCAGCTTCC GCTCCAACAT GCTGTCTCTC
GTGCGCGCGG ACGGCGCGAT GGACCTCTAC GACGGCGTGC TGCGCGCGCG TGATGCCGCC
GGCCAGATCA TCATCGACGG CGCCAGCGAC CAGAGCTACC TCGACCTGAT CGAGGAAGAG
GTGCGGCCCT GGACCTACAT GAAGTTCCCG CACCTGCGCT CGCTCGGGCG CGAGGCCGGC
TGGTATCGCG TCGGCCCGCT GGCGCGGGTG CAGAACTGCG ATTTCATCCC CAGCCCGCTG
GCCGAGGCCG AGCGCCGCGA GTTCATCGAC TGGGGCAAGG GCGAGCCCAT CCACGCCACG
CTGGCCTACC ACTGGGCCCG CATGATCGAG GTGCTGCACT CGGTGGAGGT GATCCGCGAC
CTGCTCGACG ACCCCGACAT CCTGGGCGGC GACCTGATGG CCACCGGCAC CCGGCGTGGC
GAAGGCGTGG GCATCATCGA GGCGCCACGC GGCACGCTGA TCCACCACTA CAAGGTGGGT
GACGACGACC TCGTCACGCT GTGCAACCTG ATCGTCTCGA CCACGCACAA CAACCAGGCC
ATGAACGAGG CAGTGCGCTC GGTGGCGCGC CAGTACCTCG ACGGCCAGGA GCTGACCGAG
GGCCTGCTCA ACCACATCGA GGTGGCGATC CGCGCCTACG ACCCGTGCCT GAGCTGCGCC
ACCCACGCGC TGGGCCAGAT GCCGCTCGAC GTGGTGCTGC AGGGCCCCAA CGGCGAGCTG
ATCGACCACG TGCTGAAGTC GTCGACCGGC GAGCTGGTGC GCAACCTCGC GGCACCGGTG
GGCCTGCCGG CGTGA
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| Protein sequence | MSFDLETAAA PQGLRRVAID PVSRVEGHGK VTILLDDHNR VQQVRLHIVE FRGFEKFIEG
RPYWEVPVMV QRLCGICPVS HHLAAAKAMD VVLGTQPITR SAEKIRRLMH YGQTMQSHAL
HFFHLSSPDL LFGFDSAVNL RNIVGVVQAH PDVAKKGVLL RKFGQEVIRV TAGKRVHGTG
AIPGGMNKHV SRADRDMLRR DVEQMIEWAQ DAVTIAKQLH AQNPALYDSF GSFRSNMLSL
VRADGAMDLY DGVLRARDAA GQIIIDGASD QSYLDLIEEE VRPWTYMKFP HLRSLGREAG
WYRVGPLARV QNCDFIPSPL AEAERREFID WGKGEPIHAT LAYHWARMIE VLHSVEVIRD
LLDDPDILGG DLMATGTRRG EGVGIIEAPR GTLIHHYKVG DDDLVTLCNL IVSTTHNNQA
MNEAVRSVAR QYLDGQELTE GLLNHIEVAI RAYDPCLSCA THALGQMPLD VVLQGPNGEL
IDHVLKSSTG ELVRNLAAPV GLPA
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