More than 300 homologs were found in PanDaTox collection
for query gene Glov_1553 on replicon NC_010814
Organism: Geobacter lovleyi SZ



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  66.88 
 
 
473 aa  651    Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  69.07 
 
 
473 aa  704    Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  65.61 
 
 
473 aa  650    Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  69.07 
 
 
473 aa  704    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  100 
 
 
479 aa  988    Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  41.6 
 
 
474 aa  372  1e-101  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  39.87 
 
 
472 aa  348  1e-94  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  41.65 
 
 
455 aa  340  2.9999999999999998e-92  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  39.58 
 
 
474 aa  333  3e-90  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  38.54 
 
 
474 aa  330  3e-89  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  38.54 
 
 
474 aa  329  5.0000000000000004e-89  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  38.87 
 
 
487 aa  328  1.0000000000000001e-88  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  36.63 
 
 
482 aa  324  2e-87  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  40.26 
 
 
476 aa  324  2e-87  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  39.7 
 
 
473 aa  325  2e-87  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  38 
 
 
479 aa  318  1e-85  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  39.14 
 
 
473 aa  317  2e-85  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  38.91 
 
 
474 aa  313  3.9999999999999997e-84  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  38.96 
 
 
476 aa  312  7.999999999999999e-84  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  38.41 
 
 
479 aa  312  1e-83  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  38.68 
 
 
478 aa  311  2e-83  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  37.79 
 
 
479 aa  310  5e-83  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  39.04 
 
 
509 aa  310  5e-83  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  38.34 
 
 
479 aa  308  2.0000000000000002e-82  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  36.73 
 
 
475 aa  305  2.0000000000000002e-81  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  37.78 
 
 
494 aa  305  2.0000000000000002e-81  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  37.95 
 
 
475 aa  305  2.0000000000000002e-81  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  39.81 
 
 
418 aa  303  3.0000000000000004e-81  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  36.98 
 
 
487 aa  301  2e-80  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  37.58 
 
 
494 aa  301  2e-80  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  36.8 
 
 
488 aa  299  6e-80  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  35.93 
 
 
485 aa  297  3e-79  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  36.27 
 
 
487 aa  295  1e-78  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  35.96 
 
 
471 aa  294  2e-78  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  36.42 
 
 
486 aa  292  8e-78  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  38.1 
 
 
488 aa  292  1e-77  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  38.04 
 
 
418 aa  290  3e-77  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  36.55 
 
 
494 aa  290  4e-77  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  35.6 
 
 
482 aa  290  4e-77  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  38.04 
 
 
418 aa  290  4e-77  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  37.56 
 
 
418 aa  288  1e-76  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  36.06 
 
 
507 aa  288  2e-76  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  35.58 
 
 
493 aa  286  4e-76  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  35.74 
 
 
471 aa  286  5.999999999999999e-76  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  36.52 
 
 
504 aa  283  7.000000000000001e-75  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  35.26 
 
 
504 aa  282  9e-75  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  36.67 
 
 
488 aa  281  3e-74  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  37.37 
 
 
494 aa  279  1e-73  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  36.74 
 
 
489 aa  279  1e-73  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  36.12 
 
 
418 aa  274  3e-72  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  37.28 
 
 
449 aa  272  8.000000000000001e-72  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  33.97 
 
 
499 aa  271  2e-71  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  37.19 
 
 
449 aa  268  1e-70  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  34.44 
 
 
469 aa  259  7e-68  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  36.34 
 
 
498 aa  257  4e-67  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  31.28 
 
 
424 aa  190  5e-47  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  30.79 
 
 
430 aa  186  8e-46  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  30.22 
 
 
425 aa  186  1.0000000000000001e-45  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  30.79 
 
 
430 aa  186  1.0000000000000001e-45  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  30.79 
 
 
430 aa  186  1.0000000000000001e-45  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  29.4 
 
 
424 aa  184  4.0000000000000006e-45  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  29.84 
 
 
424 aa  181  2e-44  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  29.44 
 
 
431 aa  178  2e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  30.18 
 
 
430 aa  174  3.9999999999999995e-42  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  29.46 
 
 
426 aa  172  9e-42  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  29.61 
 
 
430 aa  172  1e-41  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  29.76 
 
 
425 aa  171  2e-41  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  28.66 
 
 
431 aa  171  2e-41  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  30.65 
 
 
439 aa  170  5e-41  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_006369  lpl2387  hypothetical protein  28.17 
 
 
430 aa  169  1e-40  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2532  hypothetical protein  27.95 
 
 
430 aa  166  5.9999999999999996e-40  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  28 
 
 
433 aa  166  1.0000000000000001e-39  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  29.96 
 
 
432 aa  162  2e-38  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  29.78 
 
 
421 aa  160  4e-38  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  29.41 
 
 
433 aa  160  6e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  29.59 
 
 
433 aa  160  6e-38  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  28.3 
 
 
432 aa  159  1e-37  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  28.73 
 
 
410 aa  152  8.999999999999999e-36  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  27.38 
 
 
422 aa  150  5e-35  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  28.41 
 
 
410 aa  150  6e-35  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  27.38 
 
 
432 aa  150  6e-35  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  28.51 
 
 
425 aa  149  9e-35  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  27.4 
 
 
455 aa  148  2.0000000000000003e-34  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_012560  Avin_04400  Soluble nickel-dependent hydrogenase, large subunit, HoxH  29.04 
 
 
419 aa  144  4e-33  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  30.72 
 
 
428 aa  143  5e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_009635  Maeo_1045  nickel-dependent hydrogenase large subunit  30.56 
 
 
385 aa  143  7e-33  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  27.59 
 
 
429 aa  142  1.9999999999999998e-32  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  29.69 
 
 
428 aa  140  6e-32  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_011832  Mpal_0084  coenzyme F420 hydrogenase, subunit alpha  26.77 
 
 
455 aa  139  7.999999999999999e-32  Methanosphaerula palustris E1-9c  Archaea  decreased coverage  0.0042117  normal  0.0638209 
 
 
-
 
NC_007796  Mhun_2332  nickel-dependent hydrogenase, large subunit  25.4 
 
 
469 aa  135  1.9999999999999998e-30  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  26.58 
 
 
455 aa  135  1.9999999999999998e-30  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  25.41 
 
 
456 aa  134  5e-30  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  28.06 
 
 
423 aa  130  8.000000000000001e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  24.9 
 
 
456 aa  129  1.0000000000000001e-28  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  28.41 
 
 
423 aa  127  5e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  25.93 
 
 
481 aa  122  1.9999999999999998e-26  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_009634  Mevan_0692  nickel-dependent hydrogenase large subunit  25.29 
 
 
390 aa  120  4.9999999999999996e-26  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0627  nickel-dependent hydrogenase large subunit  27.61 
 
 
390 aa  119  1.9999999999999998e-25  Methanococcus maripaludis C7  Archaea  normal  normal  0.931032 
 
 
-
 
NC_009135  MmarC5_0196  nickel-dependent hydrogenase, large subunit  27.38 
 
 
390 aa  118  3e-25  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1291  coenzyme F420 hydrogenase, subunit alpha  26.45 
 
 
390 aa  117  3.9999999999999997e-25  Methanococcus maripaludis C6  Archaea  normal  0.333817  n/a   
 
 
-
 
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