More than 300 homologs were found in PanDaTox collection
for query gene Memar_2174 on replicon NC_009051
Organism: Methanoculleus marisnigri JR1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009712  Mboo_0479  coenzyme F420 hydrogenase  72.08 
 
 
437 aa  678    Candidatus Methanoregula boonei 6A8  Archaea  normal  0.654505  normal 
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  100 
 
 
455 aa  945    Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  72.97 
 
 
456 aa  708    Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  73.85 
 
 
456 aa  716    Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_007796  Mhun_2332  nickel-dependent hydrogenase, large subunit  76.7 
 
 
469 aa  748    Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011832  Mpal_0084  coenzyme F420 hydrogenase, subunit alpha  77.14 
 
 
455 aa  763    Methanosphaerula palustris E1-9c  Archaea  decreased coverage  0.0042117  normal  0.0638209 
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  78.02 
 
 
455 aa  757    Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_2023  nickel-dependent hydrogenase, large subunit  57.31 
 
 
438 aa  546  1e-154  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.113638 
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  42.36 
 
 
410 aa  358  9e-98  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  41.89 
 
 
410 aa  356  5e-97  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_1045  nickel-dependent hydrogenase large subunit  40.28 
 
 
385 aa  283  6.000000000000001e-75  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0692  nickel-dependent hydrogenase large subunit  38.71 
 
 
390 aa  274  3e-72  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1291  coenzyme F420 hydrogenase, subunit alpha  37.93 
 
 
390 aa  265  1e-69  Methanococcus maripaludis C6  Archaea  normal  0.333817  n/a   
 
 
-
 
NC_009637  MmarC7_0627  nickel-dependent hydrogenase large subunit  37.7 
 
 
390 aa  264  3e-69  Methanococcus maripaludis C7  Archaea  normal  normal  0.931032 
 
 
-
 
NC_009135  MmarC5_0196  nickel-dependent hydrogenase, large subunit  37.7 
 
 
390 aa  263  6e-69  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  28.06 
 
 
475 aa  159  7e-38  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  27.23 
 
 
471 aa  155  1e-36  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  27.65 
 
 
471 aa  154  4e-36  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  28.6 
 
 
455 aa  153  5e-36  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  27.99 
 
 
474 aa  150  6e-35  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  29.71 
 
 
418 aa  138  2e-31  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  29.71 
 
 
418 aa  137  5e-31  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  26.52 
 
 
486 aa  136  9e-31  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  27.82 
 
 
478 aa  134  1.9999999999999998e-30  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  26.58 
 
 
479 aa  135  1.9999999999999998e-30  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  29.25 
 
 
418 aa  133  5e-30  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  30.68 
 
 
418 aa  132  2.0000000000000002e-29  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  28.09 
 
 
485 aa  130  3e-29  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  27.25 
 
 
476 aa  130  5.0000000000000004e-29  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  27.39 
 
 
473 aa  128  2.0000000000000002e-28  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  27.14 
 
 
472 aa  128  3e-28  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  25.62 
 
 
479 aa  127  6e-28  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  26.67 
 
 
473 aa  126  9e-28  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  25.72 
 
 
479 aa  125  1e-27  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  25.42 
 
 
479 aa  125  1e-27  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  28.86 
 
 
418 aa  125  1e-27  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  27.72 
 
 
504 aa  125  2e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  27.41 
 
 
474 aa  125  2e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  27.18 
 
 
473 aa  124  3e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  23.97 
 
 
481 aa  122  9.999999999999999e-27  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  26.02 
 
 
421 aa  122  9.999999999999999e-27  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  23.94 
 
 
568 aa  122  1.9999999999999998e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  25.83 
 
 
487 aa  121  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  24.83 
 
 
570 aa  121  1.9999999999999998e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  25.87 
 
 
493 aa  122  1.9999999999999998e-26  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  27.66 
 
 
469 aa  121  1.9999999999999998e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  26.56 
 
 
509 aa  120  3.9999999999999996e-26  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  25.04 
 
 
567 aa  120  3.9999999999999996e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  25.35 
 
 
473 aa  120  4.9999999999999996e-26  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  26.13 
 
 
473 aa  120  7e-26  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  27.18 
 
 
425 aa  120  7e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  27.16 
 
 
494 aa  119  9e-26  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  25 
 
 
570 aa  119  9.999999999999999e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  26.21 
 
 
487 aa  117  3e-25  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  25.59 
 
 
430 aa  118  3e-25  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  26.36 
 
 
479 aa  118  3e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  24.22 
 
 
482 aa  117  5e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  25.89 
 
 
458 aa  115  1.0000000000000001e-24  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  27.48 
 
 
474 aa  115  1.0000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  26.96 
 
 
475 aa  115  2.0000000000000002e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  27.19 
 
 
507 aa  114  2.0000000000000002e-24  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  27.27 
 
 
474 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  26.92 
 
 
488 aa  114  3e-24  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  26.58 
 
 
431 aa  113  5e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  24.64 
 
 
474 aa  111  3e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  23.97 
 
 
514 aa  111  3e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  23.67 
 
 
568 aa  110  4.0000000000000004e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  35.2 
 
 
482 aa  110  5e-23  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  26.71 
 
 
433 aa  110  7.000000000000001e-23  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  25.59 
 
 
449 aa  109  8.000000000000001e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  25.93 
 
 
470 aa  108  2e-22  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_011830  Dhaf_0805  nickel-dependent hydrogenase large subunit  27.37 
 
 
465 aa  108  2e-22  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  24.5 
 
 
569 aa  108  3e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  25.96 
 
 
504 aa  107  3e-22  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  22.78 
 
 
566 aa  106  9e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  25.54 
 
 
432 aa  106  9e-22  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  24.08 
 
 
566 aa  106  1e-21  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  24.59 
 
 
476 aa  105  1e-21  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  25.51 
 
 
488 aa  105  1e-21  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  25.5 
 
 
517 aa  105  2e-21  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  25.05 
 
 
473 aa  105  2e-21  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  24.09 
 
 
566 aa  105  2e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  24.78 
 
 
488 aa  105  2e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  26.18 
 
 
499 aa  104  3e-21  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  22.85 
 
 
566 aa  103  5e-21  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  23.63 
 
 
485 aa  103  8e-21  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  24.95 
 
 
488 aa  103  8e-21  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  24.01 
 
 
433 aa  103  9e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  24.48 
 
 
432 aa  102  1e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  23.49 
 
 
567 aa  102  2e-20  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  25.2 
 
 
489 aa  102  2e-20  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  25.41 
 
 
428 aa  100  4e-20  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  23.68 
 
 
430 aa  100  4e-20  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  23.14 
 
 
564 aa  100  6e-20  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  21.96 
 
 
567 aa  100  6e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  25.39 
 
 
426 aa  99  1e-19  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_011899  Hore_03860  nickel-dependent hydrogenase large subunit  25.2 
 
 
470 aa  98.6  2e-19  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1940  hydrogen:quinone oxidoreductase  24.63 
 
 
475 aa  98.6  2e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  26.45 
 
 
423 aa  98.6  2e-19  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  23.15 
 
 
546 aa  98.2  2e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
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