More than 300 homologs were found in PanDaTox collection
for query gene Avi_7272 on replicon NC_011981
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007493  RSP_1451  ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein  72.17 
 
 
524 aa  802    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.482227  n/a   
 
 
-
 
NC_011981  Avi_7272  ABC-type dipeptide transport system, periplasmic component  100 
 
 
528 aa  1098    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4012  extracellular solute-binding protein family 5  84.06 
 
 
523 aa  932    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0100  extracellular solute-binding protein  72.17 
 
 
524 aa  802    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.080172 
 
 
-
 
NC_011757  Mchl_4051  extracellular solute-binding protein family 5  82.73 
 
 
523 aa  919    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.957525  normal 
 
 
-
 
NC_010172  Mext_3756  extracellular solute-binding protein  83.11 
 
 
540 aa  924    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0607711 
 
 
-
 
NC_009485  BBta_2590  putative ABC transporter, substrate-binding protein  85.42 
 
 
526 aa  936    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.174207 
 
 
-
 
NC_013739  Cwoe_1250  extracellular solute-binding protein family 5  30.85 
 
 
550 aa  201  1.9999999999999998e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.405882  normal  0.0838621 
 
 
-
 
NC_012917  PC1_4109  extracellular solute-binding protein family 5  30.54 
 
 
513 aa  148  3e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.344383  n/a   
 
 
-
 
NC_007511  Bcep18194_B1867  dipeptide/oligopeptide/nickel ABC periplasmic ligand-binding protein  28.38 
 
 
520 aa  148  3e-34  Burkholderia sp. 383  Bacteria  normal  0.30378  normal  0.527518 
 
 
-
 
NC_013421  Pecwa_4398  extracellular solute-binding protein family 5  29.96 
 
 
513 aa  144  3e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0482953  n/a   
 
 
-
 
NC_008254  Meso_2408  extracellular solute-binding protein  27.1 
 
 
505 aa  144  4e-33  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.000286915  n/a   
 
 
-
 
NC_010623  Bphy_4225  extracellular solute-binding protein  28.51 
 
 
520 aa  142  9.999999999999999e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1113  dipeptide ABC transporter periplasmic dipeptide-binding protein, putative  27.86 
 
 
520 aa  142  9.999999999999999e-33  Burkholderia thailandensis E264  Bacteria  normal  0.322522  n/a   
 
 
-
 
NC_010718  Nther_2405  extracellular solute-binding protein family 5  26.59 
 
 
532 aa  142  1.9999999999999998e-32  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000000000184044  normal 
 
 
-
 
NC_010515  Bcenmc03_3353  extracellular solute-binding protein  27.9 
 
 
520 aa  140  3.9999999999999997e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.587262  normal 
 
 
-
 
NC_010552  BamMC406_4052  extracellular solute-binding protein  27.74 
 
 
520 aa  138  2e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.544759  normal 
 
 
-
 
NC_006349  BMAA0975  putative dipeptide ABC transporter periplasmic dipeptide-binding protein  28.45 
 
 
520 aa  139  2e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  0.124849  n/a   
 
 
-
 
NC_009079  BMA10247_A1359  putative glutathione ABC transporter, periplasmic glutathione-binding protein  28.45 
 
 
520 aa  139  2e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  0.442837  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0324  putative ABC transporter substrate-binding protein  28.45 
 
 
520 aa  139  2e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1853  putative binding protein YliB  28.45 
 
 
520 aa  139  2e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_13240  ABC-type dipeptide transport system, periplasmic component  26.18 
 
 
504 aa  138  2e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0803154  normal 
 
 
-
 
NC_008061  Bcen_4203  extracellular solute-binding protein  27.7 
 
 
520 aa  139  2e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.237738  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1768  putative glutathione ABC transporter, periplasmic glutathione-binding protein  28.45 
 
 
520 aa  139  2e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  0.852283  n/a   
 
 
-
 
NC_008391  Bamb_3571  extracellular solute-binding protein  27.92 
 
 
520 aa  139  2e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.57508  normal  0.258108 
 
 
-
 
NC_008543  Bcen2424_4163  extracellular solute-binding protein  27.7 
 
 
520 aa  139  2e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0633493  decreased coverage  0.00226863 
 
 
-
 
NC_008835  BMA10229_0238  putative glutathione ABC transporter, periplasmic glutathione-binding protein  28.45 
 
 
520 aa  139  2e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0402  putative glutathione ABC transporter, periplasmic glutathione-binding protein  28.45 
 
 
520 aa  139  2e-31  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4426  extracellular solute-binding protein  26.99 
 
 
520 aa  137  5e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2454  extracellular solute-binding protein  29.16 
 
 
528 aa  135  9.999999999999999e-31  Desulfotomaculum reducens MI-1  Bacteria  normal  0.269908  n/a   
 
 
-
 
NC_007347  Reut_A1926  extracellular solute-binding protein  27.53 
 
 
518 aa  134  3e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.293523  n/a   
 
 
-
 
NC_008942  Mlab_0722  radical SAM domain-containing protein  30.4 
 
 
522 aa  133  1.0000000000000001e-29  Methanocorpusculum labreanum Z  Archaea  normal  normal  0.597639 
 
 
-
 
NC_003295  RSc1380  substate-binding periplasmic (PBP) ABC transporter protein  27.68 
 
 
517 aa  131  2.0000000000000002e-29  Ralstonia solanacearum GMI1000  Bacteria  normal  0.630202  normal 
 
 
-
 
NC_012917  PC1_0044  extracellular solute-binding protein family 5  26.5 
 
 
535 aa  130  4.0000000000000003e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3971  extracellular solute-binding protein family 5  28.09 
 
 
518 aa  129  2.0000000000000002e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3130  extracellular solute-binding protein family 5  27.22 
 
 
520 aa  129  2.0000000000000002e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  0.777715  normal 
 
 
-
 
NC_011981  Avi_7328  ABC transporter substrate binding protein (dipeptide)  28.34 
 
 
517 aa  128  2.0000000000000002e-28  Agrobacterium vitis S4  Bacteria  normal  0.399444  n/a   
 
 
-
 
NC_012856  Rpic12D_1319  extracellular solute-binding protein family 5  27.31 
 
 
521 aa  128  2.0000000000000002e-28  Ralstonia pickettii 12D  Bacteria  normal  0.0396363  normal 
 
 
-
 
NC_007951  Bxe_A0836  ABC peptide transporter, periplasmic ligand binding protein  28.09 
 
 
520 aa  128  2.0000000000000002e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.385717  normal 
 
 
-
 
NC_007948  Bpro_0139  extracellular solute-binding protein  27.9 
 
 
520 aa  128  3e-28  Polaromonas sp. JS666  Bacteria  normal  normal  0.382397 
 
 
-
 
NC_008254  Meso_1506  extracellular solute-binding protein  26.75 
 
 
501 aa  128  3e-28  Chelativorans sp. BNC1  Bacteria  normal  0.0306373  n/a   
 
 
-
 
NC_013946  Mrub_1445  extracellular solute-binding protein family 5  25.26 
 
 
495 aa  128  3e-28  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.777078 
 
 
-
 
NC_007908  Rfer_3103  extracellular solute-binding protein  28.82 
 
 
519 aa  127  4.0000000000000003e-28  Rhodoferax ferrireducens T118  Bacteria  normal  0.376049  n/a   
 
 
-
 
NC_010682  Rpic_1253  extracellular solute-binding protein family 5  27.11 
 
 
517 aa  127  5e-28  Ralstonia pickettii 12J  Bacteria  normal  0.245274  normal  0.49371 
 
 
-
 
NC_007973  Rmet_3158  extracellular solute-binding protein  29.24 
 
 
535 aa  126  9e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0049  extracellular solute-binding protein family 5  25.84 
 
 
535 aa  126  9e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  0.46848  n/a   
 
 
-
 
NC_013946  Mrub_2795  extracellular solute-binding protein family 5  28.28 
 
 
499 aa  126  1e-27  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.730452 
 
 
-
 
NC_013739  Cwoe_5016  extracellular solute-binding protein family 5  27.81 
 
 
475 aa  125  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.131281 
 
 
-
 
NC_009436  Ent638_1324  extracellular solute-binding protein  27.97 
 
 
512 aa  125  2e-27  Enterobacter sp. 638  Bacteria  normal  normal  0.725738 
 
 
-
 
NC_013946  Mrub_0161  extracellular solute-binding protein family 5  26.61 
 
 
505 aa  125  2e-27  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1408  extracellular solute-binding protein  27.73 
 
 
518 aa  125  3e-27  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00741999  normal  0.0556416 
 
 
-
 
NC_010498  EcSMS35_3863  dipeptide ABC transporter, periplasmic dipeptide-binding protein  26.41 
 
 
535 aa  124  3e-27  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03395  dipeptide transporter  26.41 
 
 
535 aa  124  4e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0168  4-phytase  26.41 
 
 
535 aa  124  4e-27  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4912  dipeptide ABC transporter, periplasmic dipeptide-binding protein  26.41 
 
 
535 aa  124  4e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4037  dipeptide ABC transporter, periplasmic dipeptide-binding protein  26.41 
 
 
535 aa  124  4e-27  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0171  4-phytase  26.41 
 
 
535 aa  124  4e-27  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03346  hypothetical protein  26.41 
 
 
535 aa  124  4e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3744  dipeptide ABC transporter, periplasmic dipeptide-binding protein  26.41 
 
 
535 aa  124  4e-27  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0146  extracellular solute-binding protein family 5  28.17 
 
 
513 aa  124  4e-27  Dickeya dadantii Ech703  Bacteria  normal  0.377896  n/a   
 
 
-
 
NC_009485  BBta_2056  periplasmic dipeptide transport protein precursor  26.03 
 
 
532 aa  124  5e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.184376  normal  0.721299 
 
 
-
 
NC_007347  Reut_A2335  extracellular solute-binding protein  29.79 
 
 
531 aa  123  7e-27  Ralstonia eutropha JMP134  Bacteria  normal  0.913035  n/a   
 
 
-
 
NC_009436  Ent638_0184  extracellular solute-binding protein  26.68 
 
 
535 aa  123  8e-27  Enterobacter sp. 638  Bacteria  normal  normal  0.507506 
 
 
-
 
NC_007973  Rmet_2496  extracellular solute-binding protein  29.92 
 
 
538 aa  123  9e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.0292957  normal 
 
 
-
 
NC_009654  Mmwyl1_0114  extracellular solute-binding protein  26.74 
 
 
530 aa  121  1.9999999999999998e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3906  dipeptide ABC transporter periplasmic dipeptide-binding protein  25.96 
 
 
526 aa  121  3e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.938997 
 
 
-
 
NC_013205  Aaci_0111  extracellular solute-binding protein family 5  26.31 
 
 
517 aa  121  3e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B3842  dipeptide ABC transporter, periplasmic dipeptide-binding protein  25.96 
 
 
526 aa  121  3e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3950  dipeptide ABC transporter periplasmic dipeptide-binding protein  25.96 
 
 
526 aa  121  3e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3431  extracellular solute-binding protein  25.43 
 
 
531 aa  121  3.9999999999999996e-26  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.000878954 
 
 
-
 
NC_009832  Spro_0138  extracellular solute-binding protein  26 
 
 
535 aa  120  3.9999999999999996e-26  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2678  extracellular solute-binding protein  28.37 
 
 
500 aa  120  4.9999999999999996e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00233729  normal  0.64261 
 
 
-
 
NC_007355  Mbar_A3678  oligopeptide ABC transporter, oligopeptide-binding protein  25.68 
 
 
525 aa  120  4.9999999999999996e-26  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.0885273 
 
 
-
 
NC_008726  Mvan_3773  extracellular solute-binding protein  25.63 
 
 
510 aa  120  6e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.434805  normal  0.505457 
 
 
-
 
NC_007519  Dde_1185  putative oligopeptide ABC transporter binding protein  29.16 
 
 
541 aa  120  7e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  unclonable  0.00000000666118  n/a   
 
 
-
 
NC_011205  SeD_A4010  dipeptide ABC transporter periplasmic dipeptide-binding protein  25.73 
 
 
526 aa  120  7.999999999999999e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2870  periplasmic dipeptide transport protein  30.12 
 
 
509 aa  119  9.999999999999999e-26  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00619899  normal  0.837363 
 
 
-
 
NC_014210  Ndas_1044  extracellular solute-binding protein family 5  29.41 
 
 
496 aa  119  9.999999999999999e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0364384  normal  0.362635 
 
 
-
 
NC_011094  SeSA_A1000  glutathione-binding protein GsiB  26.83 
 
 
512 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0979  glutathione-binding protein GsiB  26.83 
 
 
512 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0950  glutathione-binding protein GsiB  26.83 
 
 
512 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.981703  normal 
 
 
-
 
NC_011149  SeAg_B0890  glutathione-binding protein GsiB  26.83 
 
 
512 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.362875  n/a   
 
 
-
 
NC_008043  TM1040_3603  extracellular solute-binding protein  29.86 
 
 
507 aa  119  9.999999999999999e-26  Ruegeria sp. TM1040  Bacteria  normal  normal  0.721238 
 
 
-
 
NC_011094  SeSA_A3828  dipeptide ABC transporter periplasmic dipeptide-binding protein  25.73 
 
 
526 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.808847  normal 
 
 
-
 
NC_011080  SNSL254_A0917  glutathione-binding protein GsiB  26.83 
 
 
512 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3907  extracellular solute-binding protein family 5  25.84 
 
 
535 aa  119  9.999999999999999e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2974  extracellular solute-binding protein family 5  25.94 
 
 
514 aa  119  1.9999999999999998e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2587  extracellular solute-binding protein family 5  24.35 
 
 
502 aa  119  1.9999999999999998e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1658  extracellular solute-binding protein  26.44 
 
 
516 aa  119  1.9999999999999998e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  0.710594  normal 
 
 
-
 
NC_008254  Meso_0459  extracellular solute-binding protein  25.66 
 
 
504 aa  118  3e-25  Chelativorans sp. BNC1  Bacteria  normal  0.435025  n/a   
 
 
-
 
NC_008786  Veis_2237  extracellular solute-binding protein  27.23 
 
 
550 aa  118  3e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2006  transport binding transmembrane protein  29.69 
 
 
528 aa  117  3.9999999999999997e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0304834 
 
 
-
 
NC_009832  Spro_1551  extracellular solute-binding protein  26.9 
 
 
512 aa  117  3.9999999999999997e-25  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A3006  extracellular solute-binding protein  28.36 
 
 
528 aa  117  3.9999999999999997e-25  Ralstonia eutropha JMP134  Bacteria  normal  0.165169  n/a   
 
 
-
 
NC_009621  Smed_5070  extracellular solute-binding protein  30.21 
 
 
495 aa  117  3.9999999999999997e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.27843  normal 
 
 
-
 
NC_012912  Dd1591_3630  extracellular solute-binding protein family 5  30.03 
 
 
514 aa  117  5e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3507  extracellular solute-binding protein family 5  30.31 
 
 
510 aa  117  6e-25  Dickeya dadantii Ech703  Bacteria  normal  0.224944  n/a   
 
 
-
 
NC_013739  Cwoe_5018  extracellular solute-binding protein family 5  26.27 
 
 
526 aa  117  6.9999999999999995e-25  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0327585 
 
 
-
 
NC_011894  Mnod_3653  extracellular solute-binding protein family 5  26.49 
 
 
513 aa  117  6.9999999999999995e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0310608  n/a   
 
 
-
 
NC_012917  PC1_1491  extracellular solute-binding protein family 5  25.7 
 
 
514 aa  117  7.999999999999999e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
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