| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_0100 |
|---|
| Symbol | |
|---|
| ID | 4895336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | + |
|---|
| Start bp | 114016 |
|---|
| End bp | 115590 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640110683 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001041992 |
|---|
| Protein GI | 126460878 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.080172 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGAC GGAGTTTCCT TCGATACGGC GCACTGGCGG GCACGGCCCT CGGGGCGGCG
CGCATCAACC CCGACTTCTT CTTCAGCTCC GCCTTCGCGC AGGAGTCCCG CCCGCTGGTG
TTCCTCTCGG CCGAGAACAT CACCGGCAAC TGGGACCCGA CCGCGCATAC GACGCTGTCG
CAGACCAATA TCGAGGGCTT CGTCATGGGT TATCTGACCC GGGCCCCGAT GCGCCCGGAA
GAGCCCGACA AGGTGGTCTA TGAACTCGCG ACCGAGATCA CCGAGCTCGA CGCCCACCGG
CTGCAGATCA AGCTGCGCGA CGGTGTCACC TTCCACGACG GCAAGCCCTT CACCGCCGAG
GATGTGAAGG CGACCTTCGA GTACGGCGCC AAGCTCGACC GCCCGAAACA GGTCTATCCG
GGCGGCCCGG AGACCTTCTC CGTCGAGACG CCCGACGATC ATACCGTGAT CGTCGACACG
TCGAAGGGCG GCTACGGCGC CTCGCTCTTC ATCTTCCTGG CCTCCTACCT GCCGATCCTG
TCGGCCAAGG ACGTGGCCGA AGGCCCCAAA GGCCCGCTGT CGCAGCGGCT GAACGGCACC
GGCCCCTTCC GCTTCGTCGA GCAGCGCGGC AACGACACGG TGATGGAAGC CTACGATGGC
TATTTCCGCG GCGCGCCGAA GGTCACCGGC GTCACCTTCT CGTTCGTGGG CGATGCGACG
ACGCGCATGC TGTCGCTGAT GAACGGGCAG GCCGATGTGA TCGAACGGCT GGAGCCCGAG
CAGGTGGAAA CCCTGCAGGC GCGCGATGAC ATCAAGATCT CGCGGCTGGT CTCGGTCGAG
AACAAGTATC TGTGGTTCCG CTGCTCGAAG CCGCCCTTCG ACGACTGGCG CGTGCGCAAG
GCCGCCTGCC ATGCCATCGA TCGCAGCATG ATCATGGAGA TCATGGGGTC GGCGGGCGAG
GCCTCGTCGA ACTTCGTCTC GCCGATCAAG TTCGGCTATA TCGATCTGGA GAACTACCCC
GAATACAATC CCGAGGAATG CCAGCGCCTG CTGGCCGAAG CGGGCTACCC GAACGGCGAG
GGCCTGCCCG AGCTGGAATA TATCACCTCG ACCGGCTTCT ATCCCAAGAC CAAGGAATAT
GGCGAGCTGA TCGCGGCGCT TCTGCAGGAG CAGGGCTTCC CGGTCACGCT GAACGTGATG
GAGGTCGCGG CCTGGAATGA GCGGCTCTAC GACCGGCCGG GCGGCGGCCC GGGCCATATG
GTCGATTGCG GCTGGTCCAC CGGGTCTCCC GAGCCCGATC TGGTCCTGCG CACCCACTTC
CACTCCACCG CCAAGCGGAT CTGCGGCATC GTCGATCCCG AGATCGACGC CGCCCTCGAT
GCGGAGCGTG ACGCGCCCTC GCTCGAGGCG CGCAAGGAGA GCCTGCAGAC CAACCTGATG
CCGATGCTGG CCGACAAGGC GCCGGCGCTG AGCCTCTTCA CCTCGGTCCT GATCCACGGG
ATGCGAGCCA ATGTGGAGGG ACTGTTCATC TACCCGGATG GCCAGTCGGA CGCCTCGCAG
ACGACGCTCG GCTGA
|
|---|
| Protein sequence | MDRRSFLRYG ALAGTALGAA RINPDFFFSS AFAQESRPLV FLSAENITGN WDPTAHTTLS
QTNIEGFVMG YLTRAPMRPE EPDKVVYELA TEITELDAHR LQIKLRDGVT FHDGKPFTAE
DVKATFEYGA KLDRPKQVYP GGPETFSVET PDDHTVIVDT SKGGYGASLF IFLASYLPIL
SAKDVAEGPK GPLSQRLNGT GPFRFVEQRG NDTVMEAYDG YFRGAPKVTG VTFSFVGDAT
TRMLSLMNGQ ADVIERLEPE QVETLQARDD IKISRLVSVE NKYLWFRCSK PPFDDWRVRK
AACHAIDRSM IMEIMGSAGE ASSNFVSPIK FGYIDLENYP EYNPEECQRL LAEAGYPNGE
GLPELEYITS TGFYPKTKEY GELIAALLQE QGFPVTLNVM EVAAWNERLY DRPGGGPGHM
VDCGWSTGSP EPDLVLRTHF HSTAKRICGI VDPEIDAALD AERDAPSLEA RKESLQTNLM
PMLADKAPAL SLFTSVLIHG MRANVEGLFI YPDGQSDASQ TTLG
|
|---|
| |