| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2870 |
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| Symbol | dppA1 |
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| ID | 1221718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3092348 |
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| End bp | 3093877 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637239272 |
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| Product | periplasmic dipeptide transport protein |
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| Protein accession | NP_520991 |
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| Protein GI | 17547589 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00619899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.837363 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGCA TCAGCCCCCA GGCGCTGGCC ACCGATTTGA AGATTGGCAT GAGTTCGCCG
CCGACCTCGA TGGACCCGCA CTTCTACAAC CTGTTCTCCA ACATCAACGT ATCGGAGCAC
ATGTTCGAGT GCTTGGTGAA GATGGATGCG GACAGCCATA TCGTTCCGGG GCTGGCCGAG
TCGTGGAAGA TGGTCAACAA CCTGACCTGG GAGTTCAAGC TACGGCCGGG CGTGAAGTTC
CATGATGGCA GCGAGCTGAC GACGGAGGAT GTGGCGTGGT CGCTCGACAG GCCGGCGACC
ATCGTCAACA GTCCGGGCAA GTTCGATACC TACACCAAGG CGATCATCCA CAAGAAGATC
ATCGACAAGT ACACGATCCA GCTGACGACC TCGCAGCCGT ATCCGCTGAT GCTGTCGGAC
CTGACCTCGG TGTTCATCGT GCAGAAGAAG GCGACGCAGG GACTGTCGAG CGATGACTTC
GCGCAGGGCA AGGGCATGGT CGGCACCGGG CCGTTCAAGT TCGTCAGCTA CGCGCGGGAC
GACCGTGTCG AGCTGGTGCG CAACGACCAG TACTGGGGCC CGAAACCGGC TTGGGACAAG
GTGACGCTGC GCTTCATTCC CAACGGCGCG ACGCGCATCG CGGCGCTGCT GTCGGGGGAC
GTGCAGGCGA TCGAGAACGT GCCGACGCCG GACCTGGCGC GCGTGCGCGG GGATGCATCG
CTGAATTTTT TCTCGAAGAT CTCGCACCGC GTCATCTATC TGTATACGGA CGACAAGCGT
GACCCGACGC CGGATGTGAC GGGTAAGGAC GGCAAGCCGC TCGCCAAGAA TCCGCTCAAG
GACCCGCGCG TGCGTCGCGC GATGAGCATG ACGATCAACC GCCAGGGCAT CAAGGACCGC
ATCATGGAGG GCCTGGCGGA GCCGACCGAC AACCTGGTGC CACCGCAGCT GTTCGGCTAT
AACCCGAACC TGAAGACCCT CAAGTACGAT CCGGAGGGCG CGAAGAAACT GCTGGCCGAG
GCGGGCTATC CGGACGGCTT CGGCATCACG CTGCACACGC CCAACAACCG GTACGTGAAC
GACGAGAAGA TCGCGCAGAC CATCGCGCAG AACCTGACGC GCATCGGCAT CGTGACCAAG
GTGGAGGGCA TGCCGATGGC GACCTTCGCG GCCAAGAGCA TCCGGCACGA GTATTCGTTC
GGGCTGGTGG GCTGGGGCGC GCAGACGGGC GAGGTCAGCT CGCCGCTGCG GGCGCTGGTG
GCGTGCGAGG ATGCCAGGAA GGGCTACGGT ACGGTCAACT GGGGCCAGTA CTGCAACCCT
AAGATGGACG CGGTGCTCGA CAAGGCGCTC TACACCATGG ACGACAAGGA GCGCTCCAGG
CTGCTGCAGG AAGCGACCGC GATCGTGGTC GATGACGGCG GTATCATCCC GGTCCATTTC
CAGGTGACGA CGTGGGCGGC GCGCAAGGGC TTCACCTATA CGCCGCGCAC CGACGAACGC
ACTTACGCGC AGGGCTTCAT GCCGCAGTAA
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| Protein sequence | MAGISPQALA TDLKIGMSSP PTSMDPHFYN LFSNINVSEH MFECLVKMDA DSHIVPGLAE
SWKMVNNLTW EFKLRPGVKF HDGSELTTED VAWSLDRPAT IVNSPGKFDT YTKAIIHKKI
IDKYTIQLTT SQPYPLMLSD LTSVFIVQKK ATQGLSSDDF AQGKGMVGTG PFKFVSYARD
DRVELVRNDQ YWGPKPAWDK VTLRFIPNGA TRIAALLSGD VQAIENVPTP DLARVRGDAS
LNFFSKISHR VIYLYTDDKR DPTPDVTGKD GKPLAKNPLK DPRVRRAMSM TINRQGIKDR
IMEGLAEPTD NLVPPQLFGY NPNLKTLKYD PEGAKKLLAE AGYPDGFGIT LHTPNNRYVN
DEKIAQTIAQ NLTRIGIVTK VEGMPMATFA AKSIRHEYSF GLVGWGAQTG EVSSPLRALV
ACEDARKGYG TVNWGQYCNP KMDAVLDKAL YTMDDKERSR LLQEATAIVV DDGGIIPVHF
QVTTWAARKG FTYTPRTDER TYAQGFMPQ
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