More than 300 homologs were found in PanDaTox collection
for query gene Amir_3538 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_3538  extracellular solute-binding protein family 3  100 
 
 
328 aa  667    Actinosynnema mirum DSM 43827  Bacteria  normal  0.139561  n/a   
 
 
-
 
NC_013595  Sros_2306  ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein  48.81 
 
 
370 aa  246  3e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1449  extracellular solute-binding protein family 3  37.84 
 
 
295 aa  126  5e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1124  extracellular solute-binding protein family 3  36.68 
 
 
289 aa  125  1e-27  Thermobispora bispora DSM 43833  Bacteria  normal  0.901238  normal  0.221919 
 
 
-
 
NC_013510  Tcur_3287  extracellular solute-binding protein family 3  39.69 
 
 
290 aa  125  1e-27  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00463903  n/a   
 
 
-
 
NC_013235  Namu_3988  extracellular solute-binding protein family 3  38.59 
 
 
321 aa  125  1e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.0701044 
 
 
-
 
NC_009338  Mflv_3969  extracellular solute-binding protein  35.93 
 
 
279 aa  124  2e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.62818  normal 
 
 
-
 
NC_009077  Mjls_2142  extracellular solute-binding protein  33.77 
 
 
275 aa  123  5e-27  Mycobacterium sp. JLS  Bacteria  normal  0.332487  hitchhiker  0.00274771 
 
 
-
 
NC_008146  Mmcs_2155  extracellular solute-binding protein  33.77 
 
 
275 aa  123  5e-27  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2201  extracellular solute-binding protein  33.77 
 
 
275 aa  123  5e-27  Mycobacterium sp. KMS  Bacteria  normal  0.51731  normal  0.0309221 
 
 
-
 
NC_009664  Krad_1497  extracellular solute-binding protein family 3  32.39 
 
 
305 aa  122  9.999999999999999e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.165825 
 
 
-
 
NC_012669  Bcav_2444  extracellular solute-binding protein family 3  34.43 
 
 
294 aa  120  1.9999999999999998e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.474573  normal 
 
 
-
 
NC_013721  HMPREF0424_0787  extracellular solute-binding protein  32.39 
 
 
277 aa  121  1.9999999999999998e-26  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013510  Tcur_0186  extracellular solute-binding protein family 3  38.12 
 
 
279 aa  120  3.9999999999999996e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2427  extracellular solute-binding protein  35.47 
 
 
279 aa  120  3.9999999999999996e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.45539  normal  0.110976 
 
 
-
 
NC_013159  Svir_27710  amino acid-binding protein  37.69 
 
 
304 aa  119  7e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.620875 
 
 
-
 
NC_013093  Amir_6801  extracellular solute-binding protein family 3  37.89 
 
 
275 aa  118  9.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1593  extracellular solute-binding protein family 3  39.66 
 
 
278 aa  117  3e-25  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0021  amino acid ABC transporter periplasmic protein  33.06 
 
 
279 aa  113  4.0000000000000004e-24  Bifidobacterium longum DJO10A  Bacteria  normal  0.43972  n/a   
 
 
-
 
NC_013595  Sros_2222  glutamine ABC transporter (glutamine-binding protein)  37.36 
 
 
269 aa  113  4.0000000000000004e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0848138  normal 
 
 
-
 
NC_014210  Ndas_4400  extracellular solute-binding protein family 3  38.42 
 
 
281 aa  113  6e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.18197  normal 
 
 
-
 
NC_011886  Achl_2522  extracellular solute-binding protein family 3  36.41 
 
 
295 aa  111  2.0000000000000002e-23  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000888885 
 
 
-
 
NC_007333  Tfu_0809  extracellular solute-binding protein  35.36 
 
 
285 aa  110  4.0000000000000004e-23  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1470  extracellular solute-binding protein family 3  36.87 
 
 
274 aa  108  1e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.506058  n/a   
 
 
-
 
NC_014210  Ndas_0671  extracellular solute-binding protein family 3  37.71 
 
 
283 aa  108  1e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.159271  normal  0.167572 
 
 
-
 
NC_013159  Svir_07790  periplasmic component of amino acid ABC-type transporter/signal transduction system  35.47 
 
 
278 aa  108  2e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_22730  amino acid-binding protein  35.91 
 
 
290 aa  108  2e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  0.718318  n/a   
 
 
-
 
NC_008541  Arth_2802  extracellular solute-binding protein  31.69 
 
 
294 aa  108  2e-22  Arthrobacter sp. FB24  Bacteria  normal  0.228556  n/a   
 
 
-
 
NC_013521  Sked_36870  amino acid-binding protein  32.74 
 
 
290 aa  106  5e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.567657  normal  0.765232 
 
 
-
 
NC_012803  Mlut_15430  periplasmic component of amino acid ABC-type transporter/signal transduction system  36.72 
 
 
297 aa  106  5e-22  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0169266  n/a   
 
 
-
 
NC_009921  Franean1_1224  extracellular solute-binding protein  34.47 
 
 
323 aa  106  5e-22  Frankia sp. EAN1pec  Bacteria  normal  normal  0.228597 
 
 
-
 
NC_013947  Snas_4887  extracellular solute-binding protein family 3  34.91 
 
 
315 aa  103  5e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.363546  normal 
 
 
-
 
NC_014151  Cfla_1550  extracellular solute-binding protein family 3  35.19 
 
 
294 aa  103  6e-21  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.82369  normal  0.0418926 
 
 
-
 
NC_009380  Strop_1430  extracellular solute-binding protein  31.62 
 
 
294 aa  101  1e-20  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0320804 
 
 
-
 
NC_007777  Francci3_3520  extracellular solute-binding protein  32.17 
 
 
296 aa  100  2e-20  Frankia sp. CcI3  Bacteria  normal  0.0548658  normal  0.231474 
 
 
-
 
NC_013530  Xcel_1246  extracellular solute-binding protein family 3  35.06 
 
 
282 aa  99.8  5e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.177506  n/a   
 
 
-
 
NC_013235  Namu_1590  extracellular solute-binding protein family 3  35.36 
 
 
282 aa  99.8  5e-20  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.000563013  normal  0.528565 
 
 
-
 
NC_014158  Tpau_1790  extracellular solute-binding protein family 3  33.19 
 
 
323 aa  98.2  2e-19  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1256  Serine/threonine protein kinase-like protein  38.95 
 
 
751 aa  97.1  3e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.189583 
 
 
-
 
NC_009953  Sare_1394  extracellular solute-binding protein  32.48 
 
 
294 aa  96.3  7e-19  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.041771 
 
 
-
 
NC_008726  Mvan_0704  extracellular solute-binding protein  33.48 
 
 
332 aa  94.4  2e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.721157  normal  0.0331446 
 
 
-
 
NC_013441  Gbro_2206  extracellular solute-binding protein family 3  37.71 
 
 
355 aa  94  4e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3508  extracellular solute-binding protein family 3  34.4 
 
 
319 aa  92  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2806  extracellular solute-binding protein family 3  29.44 
 
 
281 aa  90.9  2e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_0201  extracellular solute-binding protein  31.75 
 
 
324 aa  91.7  2e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.241493  normal 
 
 
-
 
NC_013947  Snas_3984  extracellular solute-binding protein family 3  30.3 
 
 
323 aa  90.1  5e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3913  extracellular solute-binding protein family 3  31.44 
 
 
296 aa  88.6  1e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_10416  glutamine-binding lipoprotein glnH  31.23 
 
 
328 aa  88.6  1e-16  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.000000397853  normal  0.816893 
 
 
-
 
NC_012793  GWCH70_1476  extracellular solute-binding protein family 3  28.26 
 
 
286 aa  87.4  3e-16  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0531  extracellular solute-binding protein  30.56 
 
 
331 aa  85.9  9e-16  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4942  extracellular solute-binding protein  36.57 
 
 
341 aa  85.9  0.000000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.997084 
 
 
-
 
NC_008146  Mmcs_0541  extracellular solute-binding protein  30.16 
 
 
331 aa  84.3  0.000000000000002  Mycobacterium sp. MCS  Bacteria  normal  0.169713  n/a   
 
 
-
 
NC_008705  Mkms_0553  extracellular solute-binding protein  30.16 
 
 
331 aa  84.3  0.000000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.104829  normal 
 
 
-
 
NC_013441  Gbro_4395  extracellular solute-binding protein family 3  34.29 
 
 
340 aa  84  0.000000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3754  extracellular solute-binding protein family 3  31.65 
 
 
326 aa  81.3  0.00000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.807307  n/a   
 
 
-
 
NC_007777  Francci3_2813  extracellular solute-binding protein  31.25 
 
 
319 aa  80.9  0.00000000000003  Frankia sp. CcI3  Bacteria  normal  0.243067  normal 
 
 
-
 
NC_009674  Bcer98_0541  extracellular solute-binding protein  29.27 
 
 
275 aa  79.7  0.00000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4662  amino acid ABC transporter, amino acid-binding protein  29.57 
 
 
276 aa  79.3  0.00000000000008  Bacillus cereus G9842  Bacteria  normal  0.257219  hitchhiker  2.83751e-21 
 
 
-
 
NC_013595  Sros_7045  Serine/threonine protein kinase-like protein  34.64 
 
 
600 aa  79.3  0.00000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.200024  normal 
 
 
-
 
NC_013385  Adeg_2053  extracellular solute-binding protein family 3  27.38 
 
 
271 aa  79  0.0000000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_37210  periplasmic component of amino acid ABC-type transporter/signal transduction system  34.83 
 
 
324 aa  77.4  0.0000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.734714  normal  0.110319 
 
 
-
 
NC_003909  BCE_0708  amino acid ABC transporter, amino acid-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0769  amino acid ABC transporter, amino acid-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0607  amino acid ABC transporter amino acid-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus anthracis str. Sterne  Bacteria  normal  0.510404  n/a   
 
 
-
 
NC_005957  BT9727_0552  glutamine ABC transporter substrate-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.368136  n/a   
 
 
-
 
NC_006274  BCZK0551  glytamine ABC transporter substrate-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0697  amino acid ABC transporter, amino acid-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0640  amino acid ABC transporter amino acid-binding protein  30.54 
 
 
276 aa  77  0.0000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.223136  n/a   
 
 
-
 
NC_014151  Cfla_3062  extracellular solute-binding protein family 3  27.64 
 
 
318 aa  76.6  0.0000000000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000243689 
 
 
-
 
NC_007777  Francci3_2423  extracellular solute-binding protein  29.83 
 
 
343 aa  76.6  0.0000000000005  Frankia sp. CcI3  Bacteria  normal  0.0450755  normal  0.051876 
 
 
-
 
NC_010184  BcerKBAB4_0553  extracellular solute-binding protein  30.54 
 
 
276 aa  76.6  0.0000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_0438  antigenic protein  25.59 
 
 
266 aa  76.6  0.0000000000006  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.657093  n/a   
 
 
-
 
NC_011725  BCB4264_A0676  amino acid ABC transporter, amino acid-binding protein  29.85 
 
 
276 aa  75.9  0.0000000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4553  extracellular solute-binding protein family 3  28.51 
 
 
323 aa  74.3  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.284886 
 
 
-
 
NC_008787  CJJ81176_0928  bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein  29.44 
 
 
259 aa  73.6  0.000000000004  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.0467601  n/a   
 
 
-
 
NC_009707  JJD26997_0893  bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein  29.44 
 
 
259 aa  73.2  0.000000000006  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.144905  n/a   
 
 
-
 
NC_003912  CJE0999  bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein  28.89 
 
 
259 aa  72.8  0.000000000008  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0717  amino acid ABC transporter, amino acid-binding protein  24.46 
 
 
266 aa  71.6  0.00000000002  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00506919  n/a   
 
 
-
 
NC_011830  Dhaf_4752  extracellular solute-binding protein family 3  29.79 
 
 
269 aa  71.6  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000000170582  n/a   
 
 
-
 
NC_013517  Sterm_2118  extracellular solute-binding protein family 3  33.88 
 
 
265 aa  71.6  0.00000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.137137  n/a   
 
 
-
 
NC_013223  Dret_2153  extracellular solute-binding protein family 3  30.59 
 
 
273 aa  70.9  0.00000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0684055 
 
 
-
 
NC_013203  Apar_0448  extracellular solute-binding protein family 3  24.19 
 
 
298 aa  70.9  0.00000000003  Atopobium parvulum DSM 20469  Bacteria  normal  0.917749  normal 
 
 
-
 
NC_014213  Mesil_3397  hypothetical protein  27.76 
 
 
345 aa  70.5  0.00000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.167886  normal  0.231083 
 
 
-
 
NC_007510  Bcep18194_A6491  ABC amino acid transporter, periplasmic ligand binding protein  30.94 
 
 
260 aa  69.7  0.00000000007  Burkholderia sp. 383  Bacteria  normal  0.353302  normal  0.396985 
 
 
-
 
NC_008531  LEUM_1935  amino acid ABC transporter periplasmic protein  25.11 
 
 
288 aa  69.3  0.00000000008  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2527  extracellular solute-binding protein  33.54 
 
 
260 aa  68.9  0.0000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.97926  n/a   
 
 
-
 
NC_009636  Smed_3136  extracellular solute-binding protein  27.75 
 
 
257 aa  68.9  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.598939  normal 
 
 
-
 
NC_010508  Bcenmc03_3156  extracellular solute-binding protein  33.54 
 
 
260 aa  68.9  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0760439 
 
 
-
 
NC_008542  Bcen2424_3140  extracellular solute-binding protein  33.54 
 
 
260 aa  68.9  0.0000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1134  extracellular solute-binding protein family 3  31.03 
 
 
274 aa  68.6  0.0000000001  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0309695 
 
 
-
 
NC_008781  Pnap_1489  extracellular solute-binding protein  25.93 
 
 
268 aa  68.6  0.0000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.334737  normal 
 
 
-
 
NC_005707  BCE_A0208  amino acid ABC transporter, amino acid-binding protein  29.67 
 
 
257 aa  68.6  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011777  BCAH820_B0259  amino acid ABC transporter, amino acid-binding protein  29.67 
 
 
257 aa  68.6  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000559258 
 
 
-
 
NC_008530  LGAS_0529  amino acid ABC transporter periplasmic protein  29.41 
 
 
277 aa  68.6  0.0000000002  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.488243  hitchhiker  0.00197621 
 
 
-
 
NC_008599  CFF8240_1164  bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein  26.11 
 
 
264 aa  68.6  0.0000000002  Campylobacter fetus subsp. fetus 82-40  Bacteria  decreased coverage  0.00378552  n/a   
 
 
-
 
NC_006274  BCZK0461  amino acid ABC transporter, periplasmic solute-binding protein  28.89 
 
 
286 aa  66.6  0.0000000005  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0324  extracellular solute-binding protein  26.47 
 
 
246 aa  67  0.0000000005  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1429  extracellular solute-binding protein  29.29 
 
 
271 aa  66.2  0.0000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0342  extracellular solute-binding protein  26.47 
 
 
246 aa  66.2  0.0000000006  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0327  amino acid ABC transporter/signal transduction systems periplasmic protein  26.4 
 
 
308 aa  66.2  0.0000000007  Bifidobacterium longum DJO10A  Bacteria  normal  0.503562  n/a   
 
 
-
 
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