Gene Amir_3538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3538 
Symbol 
ID8327728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp4112009 
End bp4112995 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content72% 
IMG OID644944036 
Productextracellular solute-binding protein family 3 
Protein accessionYP_003101276 
Protein GI256377616 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.139561 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGAGG GTGAGCGCAC CACCGACGCG GACCGCGACG GGGAGCCGAG CGGGCGACGC 
ACGACCCGGT TACGCCGCTG GCGGCTGGCC GCGCTCCTGC TGGCCGTCGC CGTGCCGCTG 
GCGGGCGGGT ACTGGTGGTA CCGGGAGGCG CCCACCGTGG ACGACCTCAA GCAGCAGGCC 
GGCCTGAAGG GCAAGCAGGA GCTGGTCGTC GGCATCAAGA CCGACATGCC CGGCATCGGG 
CTGCGCGACC CGGCCACCGG CGCGTACTCC GGCTTCGACG TCGACATCGC CCGCATGATC 
GCCGCCGACC TGGGGTTCCA GGCGTCGGAC GTGCGCTTCG TGGAGATCCA GAACGAGGAC 
CGCAGCCGGA TGCGCGGCGC GAACGGCGTG CTGGTCGACC TGGTGATCGC CACCTACAGC 
ATCACCGACC GGCGCGAGGG GATGCGCGGC GTCGCCTTCT CCTCCCCGTA CCTGGAGACC 
GAGCAGTCCG TCATCACCCG CGAGGACCAC GAGCCGATCC GCGAGGCCGC CCAGCTGCGC 
GGGAAGAAGG TGTGCACGCT CAGCACCTCG ACCTCCACCG ACGCGGTGAG CGCGGCCGGG 
GCCGACATGG ACAACAGCAA CAACATCAGC GACTGCGTGG ACCGGCTGCT CGCGGGCGAG 
GTGGAGGCGG TCACCACGGA CGCGGTCATC CTCGCCGGGT TCGTCTCCGC GCACCCGGAC 
GAGCTGGCGC ACCACGACAT CGCGCTGGAG ACGCCCGAGC TGTGGGCGGT CAACACCGGG 
GACAACGCGG CCCTGCTGAC CCTGGTGAAC CTGTCGCTGC GCCGCTCCGC CTGCGACCCG 
GCCGACCAGC GGTGGGAGGA GGCGTTCGAG CGGCACCTGC GGCCGATGCT GGAGCACAAC 
CCCGGCGAGG CGCTGCCGCT GGACCGGCAG CCCGAGGCGG AGGACGTCGA CGTGCGCACC 
TGGCCGTCCA CCGTCCCGGA CTGCTGA
 
Protein sequence
MAEGERTTDA DRDGEPSGRR TTRLRRWRLA ALLLAVAVPL AGGYWWYREA PTVDDLKQQA 
GLKGKQELVV GIKTDMPGIG LRDPATGAYS GFDVDIARMI AADLGFQASD VRFVEIQNED 
RSRMRGANGV LVDLVIATYS ITDRREGMRG VAFSSPYLET EQSVITREDH EPIREAAQLR 
GKKVCTLSTS TSTDAVSAAG ADMDNSNNIS DCVDRLLAGE VEAVTTDAVI LAGFVSAHPD 
ELAHHDIALE TPELWAVNTG DNAALLTLVN LSLRRSACDP ADQRWEEAFE RHLRPMLEHN 
PGEALPLDRQ PEAEDVDVRT WPSTVPDC