| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0787 |
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| Symbol | |
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| ID | 8709835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 891869 |
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| End bp | 892702 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482888 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374005 |
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| Protein GI | 283783251 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAT TACAAAATCG CATTTTTCGT GCGATACTAG CGATGCTTTG TACCATATGT
TGCGTTATGC CACTTACAGC GTGCGACCGT AGCGATGGTA AAAAAGTCAT ACGCATTGGT
ATTAAATTCG ATCAGCCTGG TATGGGTTTC AAAAAATCAG GAACTTACGT TGGATTCGAC
GTTGATGTTG CTAAGTACGT TGCCAAAAAG CTCGGCTATT CAGAAGATCA AATCGTATGG
AAAGAATCAC CATCTAAACA GCGTGAAACA ATGCTTCAAA ACGGTGATGT AGATATGATT
GTTGCAACAT ATTCCATTAC TGACGCTCGC AAGAAAATGG TTTCGTTTGC AGGACCTTAC
TTTATTGCCG GTCAGGATTT GCTAATTCGA AAAGATGAGC ATAAAGTAAG CGGTCCAAAT
GATTTGGACG GAAAGCGTTT ATGCTCAGTT TCAGGCTCAA CATCTGCAAT TGCTATTAAG
GAGCGTTACT CTTCAAAAGT ACAGCTTATG CAACAGCCTG GTTATGCAGA ATGTGCAACT
GCATTATTCT CAGGAATTGT AGATGCTGTA ACTACCGACG ACATTATTCT TGCTGGTTTA
GCAACCGCTT CTCGAGGTCG TTTAAAGCTT GTAAACAAGC CATTTACCGC AGAATATTAC
GGAATTGGCA TTAAAAAAGG AAATACAGGC TTAGCTAAGA AAATTAATGC AGCCTTAAAA
GACATGATTC GTAACGGGTC ATGGAAAAGA GCTCTAGACG ACAATTTACG AGGCACTGGC
TTTAAGCCGA ACGCAAAGTA TAATCCGCCA ATTCCTCAAG AAGGAGAGAA GTAA
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| Protein sequence | MKILQNRIFR AILAMLCTIC CVMPLTACDR SDGKKVIRIG IKFDQPGMGF KKSGTYVGFD
VDVAKYVAKK LGYSEDQIVW KESPSKQRET MLQNGDVDMI VATYSITDAR KKMVSFAGPY
FIAGQDLLIR KDEHKVSGPN DLDGKRLCSV SGSTSAIAIK ERYSSKVQLM QQPGYAECAT
ALFSGIVDAV TTDDIILAGL ATASRGRLKL VNKPFTAEYY GIGIKKGNTG LAKKINAALK
DMIRNGSWKR ALDDNLRGTG FKPNAKYNPP IPQEGEK
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