| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0448 |
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| Symbol | |
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| ID | 8413297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 516230 |
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| End bp | 517126 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022016 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_003179470 |
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| Protein GI | 257784253 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.917749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCT TTGAAAATAC TTCCACTTCT CTTTCTCGTC GTGCTTTCCT TGGTGCAACC
GCACTTTCTG CTGCAACTCT TTTGGCAGCT TGCAAGAAAA AGGATTCCGA TGGAGCTCAG
GGCGGATCTT CTGATACAGA CTCAAAGTTT AGAACTCTTG ATGATATCAA GAAGGCAGGC
ACAGTAAATA TCGGCGTCTT CAGCGATAAG GCTCCTTTTG GTTACGTTGA TGCAAACGGT
AATTACGCTG GTTACGACAT TGTTTTTGCT GAGCGTCTTG CAAAGGATAT GGGCGTAAAG
ATTAACTACA TTGCCACTGA CGGACAAAAT CGCGTGCCTT TCTTGCAGTC AAATAAGGCA
GATATCATGC TGGCAAACTT TACGGTAACT GATGACCGTA AAGAGAAGGT TGATTTCTCC
CTGCCATACA TGAAGATCAA GCTGGGTGTT GTTTCTCCAG CTTCTGCGCC AATCACAGAC
GTTTCTCAGC TTGATGGCAA GAAGCTTATT GTTTCTAAGG GAACCACAGC TGAGGTTTGG
TTTGCTAAGA ACGCACCTAA GGTTGAGCTG GTGAAATTTG ATAGCTACGC TGATGCGTAT
AACGCGCTGC TCGACGGCCG CGGAGACGCG TTCTCAACTG ACAATACCGA GGTACTTGCA
TGGGTTAAGT CTAACCCTGG CTTTATTGTT GGCATCGATG ATCTGGGCGA CTCCGATACT
ATTGCTGCAG CAGTTCACAA AGGCAATTCT TCGCTATTGG AGTTTATCAA CAATGAGATT
ACCGGTCCTC TTGCAGAGGA GAACTTCTTC CACAAGGCCT ATGAAGAGAC GCTTGCTCCA
ATTTATGGCG ACGAGGTAGA TCCAAATACC ATGGTTGTCG AGGGCGGCAA AATTTAA
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| Protein sequence | MNFFENTSTS LSRRAFLGAT ALSAATLLAA CKKKDSDGAQ GGSSDTDSKF RTLDDIKKAG
TVNIGVFSDK APFGYVDANG NYAGYDIVFA ERLAKDMGVK INYIATDGQN RVPFLQSNKA
DIMLANFTVT DDRKEKVDFS LPYMKIKLGV VSPASAPITD VSQLDGKKLI VSKGTTAEVW
FAKNAPKVEL VKFDSYADAY NALLDGRGDA FSTDNTEVLA WVKSNPGFIV GIDDLGDSDT
IAAAVHKGNS SLLEFINNEI TGPLAEENFF HKAYEETLAP IYGDEVDPNT MVVEGGKI
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