Gene Smed_3136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3136 
Symbol 
ID5324015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3286188 
End bp3286961 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content61% 
IMG OID640792086 
Productextracellular solute-binding protein 
Protein accessionYP_001328797 
Protein GI150398330 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.598939 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCC TTCCAACGCT TTTTGCCGCT GCCCTCCTGC AACTCGCCGC CTTCGCGCCG 
GCCCATGCCG GCTCCAACCT GGAAGACGTC AAATCCGCAG GCGTTCTGAA GATCGGCACC
GAGGGCAGCT ATGCTCCCTT TACCTATCAT GATGCGAGCG GCGCTCTCGT CGGCTTCGAC
GTCGAGATCG GCCAGGAAGT TGCCAAGCGG CTCGGCGTCA AGCCGGAATT CCTCGAAGGC
AAGTGGGATG GCCTGATCGC CGGCCTCGAC GCCAACCGTT ACGACGCGGT CATCAACCAG
GTCGGCATCA CCGAGGAACG CAAGAAGAAA TACGACTTCT CCGAGCCCTA TATCGCCTCC
AAGGCCGTGC TGATCGTCCG CGGTGACGAC GAGGAGGTCA AGGACTTCGC CGATCTGAAG
GGCAAGAAAT CGGCACAGTC GCTGACCAGC AACTTCGGCA AGCTCGCACA GGCCTCGGGC
GCCGAGCTCG TGGGAACCGA CGGTTTCGAC CAGTCGATCC AGCTCGTGCT GACGGGCCGC
GCCGACGCGA CCATCAATGA CAGCCTCTCC TTCCTCGACT TCAAGAAGCA GAAGCCGGAT
GCGAACGTGA AGATCGCCGC CGAAAAGCCC GACGCCGATT ATTCCGGCAT CATCATCCGC
AAGGGCGAGC CGGAACTGCT CGAGGCAATC AACAAGGCGC TGGCGGAGAT CAAGGCCGAC
GGCACCTATC AGAGGGTCTC GCAAAAATAT TTCGGCGCCG ACGTTTCGAA GTAG
 
Protein sequence
MKILPTLFAA ALLQLAAFAP AHAGSNLEDV KSAGVLKIGT EGSYAPFTYH DASGALVGFD 
VEIGQEVAKR LGVKPEFLEG KWDGLIAGLD ANRYDAVINQ VGITEERKKK YDFSEPYIAS
KAVLIVRGDD EEVKDFADLK GKKSAQSLTS NFGKLAQASG AELVGTDGFD QSIQLVLTGR
ADATINDSLS FLDFKKQKPD ANVKIAAEKP DADYSGIIIR KGEPELLEAI NKALAEIKAD
GTYQRVSQKY FGADVSK