More than 300 homologs were found in PanDaTox collection
for query gene VIBHAR_07016 on replicon NC_009784
Organism: Vibrio harveyi ATCC BAA-1116



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009784  VIBHAR_07016  oxidoreductase  100 
 
 
256 aa  524  1e-148  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3846  short-chain dehydrogenase/reductase SDR  76.59 
 
 
254 aa  411  1e-114  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl2070  hypothetical protein  60.55 
 
 
254 aa  311  7.999999999999999e-84  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2080  hypothetical protein  60.56 
 
 
254 aa  308  4e-83  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_5965  short-chain dehydrogenase/reductase SDR  59.84 
 
 
250 aa  297  1e-79  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.443482  normal 
 
 
-
 
NC_010506  Swoo_1496  short-chain dehydrogenase/reductase SDR  53.73 
 
 
255 aa  290  2e-77  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3480  short-chain dehydrogenase/reductase SDR  53.88 
 
 
260 aa  285  7e-76  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0859  short-chain dehydrogenase/reductase SDR  53.49 
 
 
260 aa  284  1.0000000000000001e-75  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0882  short-chain dehydrogenase/reductase SDR  53.88 
 
 
260 aa  284  1.0000000000000001e-75  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0824  short chain dehydrogenase/reductase family oxidoreductase  54.9 
 
 
255 aa  282  3.0000000000000004e-75  Colwellia psychrerythraea 34H  Bacteria  normal  0.394944  n/a   
 
 
-
 
NC_009831  Ssed_1363  short chain dehydrogenase/reductase family oxidoreductase  53.26 
 
 
263 aa  280  1e-74  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3600  short-chain dehydrogenase/reductase SDR  53.15 
 
 
255 aa  279  3e-74  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000312486  n/a   
 
 
-
 
NC_009997  Sbal195_0894  short-chain dehydrogenase/reductase SDR  52.71 
 
 
260 aa  277  9e-74  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1384  short-chain dehydrogenase/reductase SDR  54.22 
 
 
257 aa  268  5e-71  Acidovorax sp. JS42  Bacteria  normal  0.981738  normal 
 
 
-
 
NC_010557  BamMC406_6155  short-chain dehydrogenase/reductase SDR  53.01 
 
 
257 aa  264  1e-69  Burkholderia ambifaria MC40-6  Bacteria  normal  0.30491  normal 
 
 
-
 
NC_008392  Bamb_6448  short-chain dehydrogenase/reductase SDR  53.01 
 
 
257 aa  264  1e-69  Burkholderia ambifaria AMMD  Bacteria  normal  0.429705  normal 
 
 
-
 
NC_010515  Bcenmc03_4431  short-chain dehydrogenase/reductase SDR  49.6 
 
 
256 aa  246  3e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.523417  normal 
 
 
-
 
NC_010552  BamMC406_3420  short-chain dehydrogenase/reductase SDR  49.19 
 
 
256 aa  244  9.999999999999999e-64  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0826034  normal 
 
 
-
 
NC_008061  Bcen_4894  short-chain dehydrogenase/reductase SDR  49.19 
 
 
256 aa  244  9.999999999999999e-64  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3269  short-chain dehydrogenase/reductase SDR  49.19 
 
 
256 aa  244  9.999999999999999e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.210768 
 
 
-
 
NC_008545  Bcen2424_6913  short-chain dehydrogenase/reductase SDR  49.19 
 
 
256 aa  244  9.999999999999999e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4263  oxidoreductase, short chain dehydrogenase/reductase family  48.79 
 
 
257 aa  242  5e-63  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1982  short-chain dehydrogenase/reductase SDR  46.4 
 
 
264 aa  222  4.9999999999999996e-57  Burkholderia ambifaria AMMD  Bacteria  normal  0.473895  n/a   
 
 
-
 
NC_009656  PSPA7_0908  3-oxoacyl-(acyl-carrier-protein) reductase  45.06 
 
 
257 aa  221  7e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  0.117831  n/a   
 
 
-
 
NC_008545  Bcen2424_6863  short-chain dehydrogenase/reductase SDR  45.6 
 
 
261 aa  218  7e-56  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224503  n/a   
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  45.7 
 
 
256 aa  214  9.999999999999999e-55  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0680  short-chain dehydrogenase/reductase SDR  45.2 
 
 
255 aa  197  1.0000000000000001e-49  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0185948  normal 
 
 
-
 
NC_009952  Dshi_1258  short-chain dehydrogenase/reductase SDR  36.65 
 
 
247 aa  144  9e-34  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.203668  normal 
 
 
-
 
NC_009832  Spro_4682  short-chain dehydrogenase/reductase SDR  35.98 
 
 
253 aa  144  1e-33  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  34.68 
 
 
263 aa  139  4.999999999999999e-32  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  34.27 
 
 
263 aa  137  2e-31  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  33.47 
 
 
260 aa  137  2e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_012669  Bcav_1544  short-chain dehydrogenase/reductase SDR  33.2 
 
 
255 aa  135  8e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.255887  normal  0.188153 
 
 
-
 
NC_013162  Coch_1303  short-chain dehydrogenase/reductase SDR  33.47 
 
 
258 aa  134  9.999999999999999e-31  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1531  3-oxoacyl-[acyl-carrier-protein] reductase  37.05 
 
 
249 aa  134  9.999999999999999e-31  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.356437 
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  32.53 
 
 
269 aa  134  1.9999999999999998e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  37.55 
 
 
266 aa  132  3.9999999999999996e-30  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_010085  Nmar_0634  short-chain dehydrogenase/reductase SDR  31.87 
 
 
253 aa  131  1.0000000000000001e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_4168  short-chain dehydrogenase/reductase SDR  33.73 
 
 
252 aa  131  1.0000000000000001e-29  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6829  short-chain dehydrogenase/reductase SDR  33.98 
 
 
237 aa  131  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.138862 
 
 
-
 
NC_009943  Dole_2662  short-chain dehydrogenase/reductase SDR  34.25 
 
 
266 aa  130  3e-29  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.783199  n/a   
 
 
-
 
NC_011884  Cyan7425_4436  short-chain dehydrogenase/reductase SDR  34.87 
 
 
265 aa  129  4.0000000000000003e-29  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  33.33 
 
 
249 aa  129  4.0000000000000003e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_22070  short chain dehydrogenase  36.33 
 
 
252 aa  129  5.0000000000000004e-29  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  36.69 
 
 
239 aa  129  5.0000000000000004e-29  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3817  3-oxoacyl-(acyl-carrier-protein) reductase  34.78 
 
 
247 aa  129  6e-29  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000000217117  n/a   
 
 
-
 
NC_008825  Mpe_A2921  dehydrogenase  31.75 
 
 
261 aa  128  9.000000000000001e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.932836 
 
 
-
 
NC_007492  Pfl01_0302  Short-chain dehydrogenase/reductase SDR  32.94 
 
 
236 aa  127  1.0000000000000001e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0186456  normal  0.262092 
 
 
-
 
NC_010725  Mpop_0259  short-chain dehydrogenase/reductase SDR  31.76 
 
 
249 aa  127  2.0000000000000002e-28  Methylobacterium populi BJ001  Bacteria  normal  normal  0.519285 
 
 
-
 
NC_008146  Mmcs_4927  short-chain dehydrogenase/reductase SDR  35.77 
 
 
239 aa  126  3e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5015  short-chain dehydrogenase/reductase SDR  35.77 
 
 
239 aa  126  3e-28  Mycobacterium sp. KMS  Bacteria  normal  normal  0.920793 
 
 
-
 
NC_013457  VEA_000603  putative 3-oxoacyl-(acyl carrier protein) reductase  33.33 
 
 
239 aa  126  4.0000000000000003e-28  Vibrio sp. Ex25  Bacteria  hitchhiker  0.0031423  n/a   
 
 
-
 
NC_013205  Aaci_0216  short-chain dehydrogenase/reductase SDR  34.39 
 
 
260 aa  125  5e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  33.47 
 
 
262 aa  125  6e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_010511  M446_2746  short-chain dehydrogenase/reductase SDR  32.16 
 
 
249 aa  125  9e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.458004  normal  0.197887 
 
 
-
 
NC_010676  Bphyt_6140  short-chain dehydrogenase/reductase SDR  32.93 
 
 
254 aa  124  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal 
 
 
-
 
NC_007794  Saro_1561  short chain dehydrogenase  32.27 
 
 
516 aa  124  2e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.636243  n/a   
 
 
-
 
NC_012880  Dd703_1599  short-chain dehydrogenase/reductase SDR  34.51 
 
 
252 aa  123  2e-27  Dickeya dadantii Ech703  Bacteria  normal  0.166139  n/a   
 
 
-
 
NC_007948  Bpro_3536  short-chain dehydrogenase/reductase SDR  31.4 
 
 
274 aa  124  2e-27  Polaromonas sp. JS666  Bacteria  normal  normal  0.446578 
 
 
-
 
NC_010320  Teth514_1808  short-chain dehydrogenase/reductase SDR  32.41 
 
 
245 aa  124  2e-27  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1994  short-chain dehydrogenase/reductase SDR  32.11 
 
 
245 aa  124  2e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5308  short-chain dehydrogenase/reductase SDR  34.96 
 
 
239 aa  124  2e-27  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3437  short-chain dehydrogenase/reductase SDR  33.47 
 
 
262 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1718  short-chain dehydrogenase/reductase SDR  33.6 
 
 
253 aa  123  3e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4614  short-chain dehydrogenase/reductase SDR  34.43 
 
 
250 aa  123  3e-27  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06461  3-oxoacyl-(acyl carrier protein) reductase  32.53 
 
 
239 aa  123  3e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008726  Mvan_5156  short chain dehydrogenase  33.86 
 
 
254 aa  123  3e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.215894  normal 
 
 
-
 
NC_009708  YpsIP31758_1693  2-deoxy-D-gluconate 3-dehydrogenase  32.27 
 
 
253 aa  122  5e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.523034  n/a   
 
 
-
 
NC_012034  Athe_2383  2-deoxy-D-gluconate 3-dehydrogenase  33.33 
 
 
253 aa  122  5e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2742  3-oxoacyl-(acyl-carrier-protein) reductase  32.39 
 
 
246 aa  122  5e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1954  short chain dehydrogenase/reductase family oxidoreductase  31.75 
 
 
250 aa  122  5e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1803  2-deoxy-D-gluconate 3-dehydrogenase  32.27 
 
 
253 aa  122  5e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.711857  n/a   
 
 
-
 
NC_008347  Mmar10_0232  2-deoxy-D-gluconate 3-dehydrogenase  33.87 
 
 
251 aa  122  5e-27  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2643  2-deoxy-D-gluconate 3-dehydrogenase  32.27 
 
 
253 aa  122  5e-27  Yersinia pestis Angola  Bacteria  normal  0.802213  normal  0.105966 
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  32.81 
 
 
246 aa  122  6e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1300  short-chain dehydrogenase/reductase SDR  35.06 
 
 
262 aa  122  6e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4381  short-chain dehydrogenase/reductase SDR  32.16 
 
 
254 aa  122  8e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  33.06 
 
 
246 aa  121  9e-27  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_012669  Bcav_2974  short-chain dehydrogenase/reductase SDR  30.8 
 
 
259 aa  121  9.999999999999999e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0079  short-chain dehydrogenase/reductase SDR  32.94 
 
 
246 aa  121  9.999999999999999e-27  Variovorax paradoxus S110  Bacteria  normal  0.596846  n/a   
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  35.41 
 
 
261 aa  121  9.999999999999999e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_009654  Mmwyl1_4175  short-chain dehydrogenase/reductase SDR  30.61 
 
 
258 aa  121  9.999999999999999e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2225  glucose 1-dehydrogenase, putative  33.6 
 
 
261 aa  121  9.999999999999999e-27  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1879  short-chain dehydrogenase/reductase SDR  33.6 
 
 
261 aa  121  9.999999999999999e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.828765 
 
 
-
 
NC_008463  PA14_40900  putative short-chain dehydrogenase  34.26 
 
 
253 aa  120  9.999999999999999e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4522  short-chain dehydrogenase/reductase SDR  29.96 
 
 
255 aa  120  9.999999999999999e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.556744  normal  0.320404 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  35.04 
 
 
261 aa  120  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  32.52 
 
 
247 aa  120  1.9999999999999998e-26  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_011369  Rleg2_0264  short-chain dehydrogenase/reductase SDR  31.71 
 
 
257 aa  120  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  32.81 
 
 
246 aa  120  1.9999999999999998e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_013411  GYMC61_2516  short-chain dehydrogenase/reductase SDR  32.81 
 
 
256 aa  120  1.9999999999999998e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_1834  short-chain dehydrogenase/reductase SDR  33.2 
 
 
257 aa  120  1.9999999999999998e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1089  short-chain dehydrogenase/reductase SDR  33.2 
 
 
259 aa  120  1.9999999999999998e-26  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0332234  normal 
 
 
-
 
NC_009952  Dshi_0620  3-oxoacyl-[acyl-carrier-protein] reductase  33.73 
 
 
250 aa  120  1.9999999999999998e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.890979 
 
 
-
 
NC_009338  Mflv_1601  short chain dehydrogenase  33.59 
 
 
253 aa  120  1.9999999999999998e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.786043  normal 
 
 
-
 
NC_013739  Cwoe_2062  short-chain dehydrogenase/reductase SDR  32.8 
 
 
278 aa  119  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4577  short chain dehydrogenase  33.07 
 
 
253 aa  119  3e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  33.06 
 
 
246 aa  120  3e-26  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4665  short chain dehydrogenase  33.07 
 
 
253 aa  119  3e-26  Mycobacterium sp. KMS  Bacteria  normal  0.302874  normal 
 
 
-
 
NC_009077  Mjls_4960  short chain dehydrogenase  33.07 
 
 
253 aa  119  3e-26  Mycobacterium sp. JLS  Bacteria  normal  0.599873  normal  0.483357 
 
 
-
 
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