More than 300 homologs were found in PanDaTox collection
for query gene Sked_37860 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
221 aa  435  1e-121  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  57.92 
 
 
220 aa  223  2e-57  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  56.76 
 
 
223 aa  216  2e-55  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  58.53 
 
 
261 aa  216  2e-55  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  54.55 
 
 
232 aa  214  9e-55  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  55.2 
 
 
222 aa  213  1.9999999999999998e-54  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  53.39 
 
 
222 aa  211  4.9999999999999996e-54  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  53.46 
 
 
226 aa  211  5.999999999999999e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  56.88 
 
 
222 aa  211  5.999999999999999e-54  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  53.85 
 
 
236 aa  209  3e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  55.3 
 
 
226 aa  209  3e-53  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  53.21 
 
 
223 aa  208  5e-53  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  56.42 
 
 
217 aa  208  6e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  54.75 
 
 
226 aa  207  1e-52  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  52.49 
 
 
221 aa  207  1e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  53.6 
 
 
223 aa  204  6e-52  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  51.36 
 
 
215 aa  202  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  53.46 
 
 
214 aa  200  9.999999999999999e-51  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  53.39 
 
 
221 aa  200  9.999999999999999e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  51.82 
 
 
221 aa  200  1.9999999999999998e-50  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  51.14 
 
 
224 aa  200  1.9999999999999998e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  54.3 
 
 
225 aa  200  1.9999999999999998e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  50.69 
 
 
224 aa  199  3e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  51.38 
 
 
226 aa  199  3.9999999999999996e-50  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  52.75 
 
 
224 aa  198  5e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  51.56 
 
 
227 aa  198  6e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  52.36 
 
 
244 aa  197  7e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  52.53 
 
 
228 aa  196  2.0000000000000003e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  54.5 
 
 
225 aa  196  2.0000000000000003e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  50 
 
 
221 aa  196  3e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  50.45 
 
 
233 aa  196  3e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  53.88 
 
 
228 aa  195  5.000000000000001e-49  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  53.18 
 
 
224 aa  194  7e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  50.23 
 
 
225 aa  194  7e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  51.15 
 
 
226 aa  194  9e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  52.07 
 
 
226 aa  193  1e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  51.35 
 
 
241 aa  193  1e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  50.93 
 
 
222 aa  194  1e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  49.1 
 
 
223 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  48.46 
 
 
234 aa  192  2e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  50 
 
 
225 aa  192  3e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  50.91 
 
 
228 aa  192  3e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  50.68 
 
 
227 aa  192  4e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.08 
 
 
229 aa  191  1e-47  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  48.4 
 
 
230 aa  190  2e-47  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  51.63 
 
 
241 aa  189  2.9999999999999997e-47  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  50.45 
 
 
226 aa  188  5e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  52.78 
 
 
225 aa  188  5e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  50.23 
 
 
218 aa  188  5.999999999999999e-47  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  48.17 
 
 
226 aa  187  9e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  50.9 
 
 
219 aa  187  1e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  50.45 
 
 
247 aa  186  3e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  50 
 
 
225 aa  186  3e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  51.36 
 
 
234 aa  185  4e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  52.05 
 
 
235 aa  185  5e-46  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  49.77 
 
 
218 aa  185  5e-46  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  47.73 
 
 
218 aa  185  6e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  45.91 
 
 
221 aa  184  8e-46  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.86 
 
 
239 aa  184  8e-46  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  50.23 
 
 
215 aa  183  1.0000000000000001e-45  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  47.83 
 
 
242 aa  182  2.0000000000000003e-45  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.77 
 
 
225 aa  183  2.0000000000000003e-45  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  49.77 
 
 
223 aa  182  3e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  50.92 
 
 
214 aa  182  3e-45  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  50.45 
 
 
215 aa  182  5.0000000000000004e-45  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  47.53 
 
 
225 aa  181  5.0000000000000004e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  48.7 
 
 
226 aa  182  5.0000000000000004e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  50.46 
 
 
239 aa  181  5.0000000000000004e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.377169 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.78 
 
 
226 aa  181  6e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  47 
 
 
220 aa  181  8.000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  46.41 
 
 
231 aa  181  1e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  45.21 
 
 
231 aa  180  1e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_012669  Bcav_3891  two component transcriptional regulator, LuxR family  47.95 
 
 
221 aa  180  1e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  48.17 
 
 
218 aa  179  2e-44  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  49.54 
 
 
228 aa  179  2e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  52.29 
 
 
224 aa  180  2e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  48.25 
 
 
241 aa  179  2.9999999999999997e-44  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  50.45 
 
 
221 aa  179  2.9999999999999997e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  50.69 
 
 
220 aa  179  2.9999999999999997e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  48.64 
 
 
217 aa  179  2.9999999999999997e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  48.87 
 
 
224 aa  179  4e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  48.21 
 
 
230 aa  179  4e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  48 
 
 
224 aa  178  4.999999999999999e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_014151  Cfla_3337  two component transcriptional regulator, LuxR family  48.39 
 
 
254 aa  178  5.999999999999999e-44  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0952095  normal  0.130531 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  48.17 
 
 
227 aa  178  5.999999999999999e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  50.45 
 
 
216 aa  178  5.999999999999999e-44  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  48.84 
 
 
234 aa  178  5.999999999999999e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  49.77 
 
 
225 aa  178  7e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  49.55 
 
 
215 aa  178  7e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  48.85 
 
 
217 aa  178  7e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  50.46 
 
 
224 aa  177  9e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  46.7 
 
 
228 aa  177  1e-43  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  49.1 
 
 
219 aa  177  1e-43  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  49.07 
 
 
220 aa  177  2e-43  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  49.3 
 
 
225 aa  176  2e-43  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  49.1 
 
 
220 aa  177  2e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  49.07 
 
 
219 aa  177  2e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  48.64 
 
 
230 aa  176  2e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  48.13 
 
 
224 aa  176  3e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  49.1 
 
 
229 aa  175  5e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
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