More than 300 homologs were found in PanDaTox collection
for query gene Rru_A3667 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A3667  Short-chain dehydrogenase/reductase SDR  100 
 
 
284 aa  577  1e-164  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.847413  n/a   
 
 
-
 
NC_011884  Cyan7425_3474  short-chain dehydrogenase/reductase SDR  63.93 
 
 
285 aa  376  1e-103  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.345409 
 
 
-
 
NC_012793  GWCH70_0706  short-chain dehydrogenase/reductase SDR  63.77 
 
 
287 aa  374  1e-103  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1520  short-chain dehydrogenase/reductase SDR  63.77 
 
 
287 aa  375  1e-103  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_1059  short-chain dehydrogenase/reductase SDR  62.59 
 
 
284 aa  368  1e-101  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.102631 
 
 
-
 
NC_009972  Haur_2365  short-chain dehydrogenase/reductase SDR  62.24 
 
 
288 aa  369  1e-101  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000784864  n/a   
 
 
-
 
NC_007413  Ava_2428  Short-chain dehydrogenase/reductase SDR  61.65 
 
 
285 aa  362  3e-99  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00441007 
 
 
-
 
NC_008254  Meso_1525  short-chain dehydrogenase/reductase SDR  59.36 
 
 
283 aa  354  7.999999999999999e-97  Chelativorans sp. BNC1  Bacteria  normal  0.623157  n/a   
 
 
-
 
NC_007614  Nmul_A1180  Short-chain dehydrogenase/reductase SDR  61.23 
 
 
293 aa  353  1e-96  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0727781  n/a   
 
 
-
 
NC_008255  CHU_2292  short-chain dehydrogenase/reductase, oxidoreductase  56.74 
 
 
291 aa  350  1e-95  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.253121  normal  0.0256653 
 
 
-
 
NC_013132  Cpin_0994  short-chain dehydrogenase/reductase SDR  60.29 
 
 
288 aa  348  8e-95  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0818  short chain dehydrogenase  59.14 
 
 
288 aa  347  2e-94  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0416  short-chain dehydrogenase/reductase SDR  59.57 
 
 
287 aa  346  2e-94  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0042  short-chain dehydrogenase/reductase SDR  63.3 
 
 
282 aa  346  3e-94  Opitutus terrae PB90-1  Bacteria  normal  normal  0.144902 
 
 
-
 
NC_011658  BCAH187_A0912  short chain dehydrogenase  59.5 
 
 
288 aa  345  4e-94  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0655  short chain dehydrogenase  59.14 
 
 
288 aa  345  7e-94  Bacillus cereus E33L  Bacteria  hitchhiker  0.000332724  n/a   
 
 
-
 
NC_009674  Bcer98_0632  short chain dehydrogenase  59.06 
 
 
288 aa  344  8e-94  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.000000680928  n/a   
 
 
-
 
NC_005945  BAS0712  short chain dehydrogenase  59.14 
 
 
288 aa  343  2e-93  Bacillus anthracis str. Sterne  Bacteria  normal  0.712851  n/a   
 
 
-
 
NC_005957  BT9727_0663  short chain dehydrogenase  59.14 
 
 
288 aa  343  2e-93  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0748  short chain dehydrogenase  59.14 
 
 
288 aa  343  2e-93  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0824  short chain dehydrogenase  59.14 
 
 
288 aa  343  2e-93  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.87827e-53 
 
 
-
 
NC_012918  GM21_0121  short-chain dehydrogenase/reductase SDR  59.93 
 
 
286 aa  340  1e-92  Geobacter sp. M21  Bacteria  n/a    normal  0.984934 
 
 
-
 
NC_011725  BCB4264_A0805  short chain dehydrogenase  58.42 
 
 
288 aa  341  1e-92  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0138  short-chain dehydrogenase/reductase SDR  59.93 
 
 
286 aa  339  4e-92  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5291  short-chain dehydrogenase/reductase SDR  59.56 
 
 
283 aa  339  4e-92  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_2288  short-chain dehydrogenase/reductase SDR  61.31 
 
 
306 aa  338  4e-92  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4525  short chain dehydrogenase  58.06 
 
 
288 aa  338  4e-92  Bacillus cereus G9842  Bacteria  normal  normal  0.193288 
 
 
-
 
NC_010184  BcerKBAB4_0667  short chain dehydrogenase  57.97 
 
 
288 aa  336  2.9999999999999997e-91  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.401827  n/a   
 
 
-
 
NC_007348  Reut_B4376  Short-chain dehydrogenase/reductase SDR  59.36 
 
 
285 aa  335  3.9999999999999995e-91  Ralstonia eutropha JMP134  Bacteria  normal  0.896027  n/a   
 
 
-
 
NC_011830  Dhaf_2576  short-chain dehydrogenase/reductase SDR  59.71 
 
 
289 aa  335  5e-91  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3818  short-chain dehydrogenase/reductase SDR  58.12 
 
 
286 aa  335  5.999999999999999e-91  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4895  short-chain dehydrogenase/reductase SDR  58.12 
 
 
286 aa  335  5.999999999999999e-91  Ralstonia pickettii 12J  Bacteria  normal  normal  0.317832 
 
 
-
 
NC_008463  PA14_36870  putative short-chain dehydrogenase  58.33 
 
 
286 aa  335  5.999999999999999e-91  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_11090  Short-chain dehydrogenase/reductase  59.06 
 
 
286 aa  335  7e-91  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0261  short-chain dehydrogenase/reductase SDR  57.24 
 
 
285 aa  333  1e-90  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.566144  normal 
 
 
-
 
NC_013730  Slin_0453  short-chain dehydrogenase/reductase SDR  57.71 
 
 
284 aa  332  4e-90  Spirosoma linguale DSM 74  Bacteria  normal  0.22798  normal 
 
 
-
 
NC_007963  Csal_0064  short-chain dehydrogenase/reductase SDR  56.12 
 
 
284 aa  327  1.0000000000000001e-88  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0331  short-chain dehydrogenase/reductase SDR  59.78 
 
 
297 aa  326  2.0000000000000001e-88  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2306  short-chain dehydrogenase/reductase SDR  57.24 
 
 
284 aa  323  3e-87  Pseudomonas mendocina ymp  Bacteria  normal  0.361211  hitchhiker  0.00000740353 
 
 
-
 
NC_007947  Mfla_1426  short-chain dehydrogenase/reductase SDR  57.45 
 
 
296 aa  321  9.999999999999999e-87  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.530393 
 
 
-
 
NC_008261  CPF_2925  short chain dehydrogenase/reductase family oxidoreductase  53.6 
 
 
296 aa  318  9e-86  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3356  short-chain dehydrogenase/reductase SDR  53.99 
 
 
282 aa  315  6e-85  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1368  short-chain dehydrogenase/reductase SDR  57.84 
 
 
285 aa  314  8e-85  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.00277313  n/a   
 
 
-
 
NC_008544  Bcen2424_6461  short-chain dehydrogenase/reductase SDR  57.84 
 
 
285 aa  314  8e-85  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6383  short-chain dehydrogenase/reductase SDR  57.46 
 
 
285 aa  313  9.999999999999999e-85  Burkholderia ambifaria MC40-6  Bacteria  normal  0.11398  normal  0.546447 
 
 
-
 
NC_010512  Bcenmc03_6053  short-chain dehydrogenase/reductase SDR  57.09 
 
 
285 aa  313  1.9999999999999998e-84  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0516293 
 
 
-
 
NC_009956  Dshi_3899  short-chain dehydrogenase/reductase SDR  52.46 
 
 
284 aa  311  5.999999999999999e-84  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.190456 
 
 
-
 
NC_008392  Bamb_5635  short-chain dehydrogenase/reductase SDR  57.09 
 
 
285 aa  311  5.999999999999999e-84  Burkholderia ambifaria AMMD  Bacteria  normal  0.0246755  normal  0.0427159 
 
 
-
 
NC_010087  Bmul_5457  short-chain dehydrogenase/reductase SDR  56.34 
 
 
285 aa  308  5.9999999999999995e-83  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00217132 
 
 
-
 
NC_008261  CPF_2905  short chain dehydrogenase/reductase family oxidoreductase  55.91 
 
 
292 aa  306  2.0000000000000002e-82  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2584  short chain dehydrogenase/reductase family oxidoreductase  55.91 
 
 
292 aa  305  7e-82  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2188  short-chain dehydrogenase/reductase SDR  58.33 
 
 
292 aa  304  1.0000000000000001e-81  Eggerthella lenta DSM 2243  Bacteria  normal  0.907948  normal 
 
 
-
 
NC_009675  Anae109_2764  short-chain dehydrogenase/reductase SDR  54.74 
 
 
293 aa  303  2.0000000000000002e-81  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.133433  normal 
 
 
-
 
NC_013730  Slin_0452  short-chain dehydrogenase/reductase SDR  52.71 
 
 
287 aa  299  3e-80  Spirosoma linguale DSM 74  Bacteria  normal  0.259282  normal  0.969458 
 
 
-
 
NC_006349  BMAA1971  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
285 aa  296  2e-79  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0942003  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1370  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
285 aa  296  2e-79  Burkholderia pseudomallei 1710b  Bacteria  normal  0.473076  n/a   
 
 
-
 
NC_008784  BMASAVP1_0991  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
291 aa  297  2e-79  Burkholderia mallei SAVP1  Bacteria  normal  0.123495  n/a   
 
 
-
 
NC_008835  BMA10229_1278  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
285 aa  296  2e-79  Burkholderia mallei NCTC 10229  Bacteria  normal  0.93331  n/a   
 
 
-
 
NC_009075  BURPS668_A3149  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
285 aa  296  2e-79  Burkholderia pseudomallei 668  Bacteria  normal  0.653242  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3020  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
285 aa  296  2e-79  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2253  short chain dehydrogenase/reductase family oxidoreductase  52.3 
 
 
285 aa  296  2e-79  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2818  short-chain dehydrogenase/reductase SDR  55.11 
 
 
295 aa  293  2e-78  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0789  short-chain dehydrogenase/reductase SDR  53.87 
 
 
291 aa  293  2e-78  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.608035  n/a   
 
 
-
 
NC_011992  Dtpsy_1817  short chain dehydrogenase  54.18 
 
 
337 aa  292  3e-78  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2906  short-chain dehydrogenase/reductase SDR  54.01 
 
 
295 aa  292  5e-78  Anaeromyxobacter sp. K  Bacteria  normal  0.0346785  n/a   
 
 
-
 
NC_008781  Pnap_2744  short chain dehydrogenase  54.41 
 
 
334 aa  292  5e-78  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.972914  normal  0.0520687 
 
 
-
 
NC_007005  Psyr_2411  Short-chain dehydrogenase/reductase SDR  50.88 
 
 
286 aa  290  3e-77  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3000  short-chain dehydrogenase/reductase SDR  54.01 
 
 
295 aa  290  3e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.546475  n/a   
 
 
-
 
NC_004578  PSPTO_2677  oxidoreductase, short chain dehydrogenase/reductase family  51.23 
 
 
286 aa  288  7e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.822958  n/a   
 
 
-
 
NC_008726  Mvan_4753  short-chain dehydrogenase/reductase SDR  53.38 
 
 
284 aa  287  1e-76  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.163262  normal  0.97721 
 
 
-
 
NC_007484  Noc_0460  short chain dehydrogenase  50.17 
 
 
291 aa  287  2e-76  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5292  short-chain dehydrogenase/reductase SDR  51.87 
 
 
300 aa  286  2e-76  Spirosoma linguale DSM 74  Bacteria  normal  0.319997  normal  0.350002 
 
 
-
 
NC_013441  Gbro_4291  short-chain dehydrogenase/reductase SDR  51.76 
 
 
285 aa  287  2e-76  Gordonia bronchialis DSM 43247  Bacteria  normal  0.957314  n/a   
 
 
-
 
NC_009512  Pput_3031  short-chain dehydrogenase/reductase SDR  53.17 
 
 
285 aa  286  2.9999999999999996e-76  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2723  short chain dehydrogenase/reductase family oxidoreductase  52.82 
 
 
285 aa  285  5e-76  Pseudomonas putida KT2440  Bacteria  normal  0.612253  normal 
 
 
-
 
NC_002976  SERP2129  short chain dehydrogenase/reductase family oxidoreductase  51.27 
 
 
289 aa  284  1.0000000000000001e-75  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1277  short-chain dehydrogenase/reductase SDR  53.16 
 
 
285 aa  283  3.0000000000000004e-75  Mycobacterium sp. MCS  Bacteria  normal  0.716847  n/a   
 
 
-
 
NC_010322  PputGB1_3001  short-chain dehydrogenase/reductase SDR  52.17 
 
 
285 aa  282  3.0000000000000004e-75  Pseudomonas putida GB-1  Bacteria  normal  0.798039  normal 
 
 
-
 
NC_008705  Mkms_1294  short-chain dehydrogenase/reductase SDR  53.16 
 
 
285 aa  283  3.0000000000000004e-75  Mycobacterium sp. KMS  Bacteria  normal  normal  0.110576 
 
 
-
 
NC_009621  Smed_5297  short chain dehydrogenase  52.55 
 
 
317 aa  282  4.0000000000000003e-75  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.460339 
 
 
-
 
NC_009077  Mjls_1306  short-chain dehydrogenase/reductase SDR  52.42 
 
 
285 aa  281  6.000000000000001e-75  Mycobacterium sp. JLS  Bacteria  normal  0.603842  normal 
 
 
-
 
NC_007952  Bxe_B1317  Short-chain dehydrogenase  52.9 
 
 
288 aa  279  4e-74  Burkholderia xenovorans LB400  Bacteria  normal  0.169913  normal  0.0434292 
 
 
-
 
NC_013159  Svir_27180  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  50.91 
 
 
281 aa  279  4e-74  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3745  short-chain dehydrogenase/reductase SDR  52.55 
 
 
292 aa  276  3e-73  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.082877 
 
 
-
 
NC_012791  Vapar_1207  short chain dehydrogenase  53.68 
 
 
337 aa  276  3e-73  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1963  short-chain dehydrogenase/reductase SDR  51.41 
 
 
284 aa  275  7e-73  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.757824  normal  0.126466 
 
 
-
 
NC_011368  Rleg2_5249  short chain dehydrogenase  50.55 
 
 
318 aa  275  8e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.109132  normal 
 
 
-
 
NC_014151  Cfla_3237  short-chain dehydrogenase/reductase SDR  52.57 
 
 
308 aa  272  5.000000000000001e-72  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.278854  normal  0.143787 
 
 
-
 
NC_008752  Aave_4486  short-chain dehydrogenase/reductase SDR  50.89 
 
 
292 aa  271  8.000000000000001e-72  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0684702 
 
 
-
 
NC_013730  Slin_5467  short-chain dehydrogenase/reductase SDR  48.54 
 
 
305 aa  270  1e-71  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1330  short-chain dehydrogenase/reductase SDR  50.55 
 
 
285 aa  271  1e-71  Methylobacterium populi BJ001  Bacteria  normal  normal  0.359984 
 
 
-
 
NC_011757  Mchl_0766  short-chain dehydrogenase/reductase SDR  50.55 
 
 
285 aa  270  1e-71  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.717925 
 
 
-
 
NC_010172  Mext_1018  short-chain dehydrogenase/reductase SDR  50.18 
 
 
285 aa  270  2e-71  Methylobacterium extorquens PA1  Bacteria  normal  0.136189  normal 
 
 
-
 
NC_010681  Bphyt_2025  short-chain dehydrogenase/reductase SDR  51.82 
 
 
288 aa  270  2.9999999999999997e-71  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.000209901 
 
 
-
 
NC_008686  Pden_1134  short-chain dehydrogenase/reductase SDR  52.94 
 
 
285 aa  269  2.9999999999999997e-71  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5613  short-chain dehydrogenase/reductase SDR  48.78 
 
 
288 aa  269  4e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.207761 
 
 
-
 
NC_011894  Mnod_1379  short-chain dehydrogenase/reductase SDR  48.57 
 
 
286 aa  268  5.9999999999999995e-71  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.268463  n/a   
 
 
-
 
NC_013061  Phep_2635  short-chain dehydrogenase/reductase SDR  54.12 
 
 
298 aa  268  7e-71  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.795136 
 
 
-
 
NC_010571  Oter_0675  short-chain dehydrogenase/reductase SDR  50.71 
 
 
301 aa  266  2e-70  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0068  short-chain dehydrogenase/reductase SDR  54.21 
 
 
368 aa  266  2e-70  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.521735  normal 
 
 
-
 
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