| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2292 |
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| Symbol | yhdF |
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| ID | 4186679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2663214 |
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| End bp | 2664089 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638072292 |
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| Product | short-chain dehydrogenase/reductase, oxidoreductase |
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| Protein accession | YP_678895 |
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| Protein GI | 110638686 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.253121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0256653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAGATA CAATGGATTC AGCAACGGAA GAAATACTTA GAGAACCTCA GCAACAGGAA
AGGCCGGGTA AAGAAACGGA TATGAAGCCA AGGCCTCAAT CTGAAAATAA TGCACCGGGC
AATAATAAAC TGAAAAACAA AATCGCTTTG ATTACCGGAG GTGATAGCGG AATTGGTAAA
GCTGTTGCAT TGCTTTTTGC TAAAGAAGGA GCCGATGTTG CCATTGTATA TTTAAATGAA
CATGCTGATG CGCTTGAAAC ACAAAGCATA ATCAATGCTA AATACAGTAA ACAGTGCTTG
CTGTTACCGG GCGACATAAG CAACGAATCT TTTTGCAGTA AGGTGATTGA TCAGGTGATT
GAGACATTCG GACGCATTGA TATTCTTGTG AATAATGCTG GTATTCATTA CGAATGTGAG
GATCTGGCAG AACTGGTTAC TGAAAAAATG ATCGCAACAT TTGAAACCAA TGTGTATAGT
ATGTTCTGGA TTACGAAGTA TGCATTGCCG CATTTGAAAG CCGGAAGTTC TATCATAAAC
AGTTCTTCTG TTACGGCATA TCGTGGTAGC AAGCATCTGA TTGATTATGC AGCAACAAAA
GGTGCAATTG TTTCTTTTAC ACGCAGCTTA TCATCGAGTT TAGTAGACAA AGGCATTCGT
GTAAATGGCG TCGCACCCGG CCCGATCTGG ACACCGTTGA TTCCATCTTC TTTTGAAGAG
GACAGAGTGG CCAAACACGG ATTGAATGCA CCCATGCACA GAGCAGGAGA ACCTTCGGAA
GTTGCACCTT CTTACCTGTT TCTGGCAAGC GAAGACGCTT CTTATATAAC AGGACAATTC
CTGCATCCAA ACGGTGGTGA AATTATTAAT GGTTAA
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| Protein sequence | MEDTMDSATE EILREPQQQE RPGKETDMKP RPQSENNAPG NNKLKNKIAL ITGGDSGIGK
AVALLFAKEG ADVAIVYLNE HADALETQSI INAKYSKQCL LLPGDISNES FCSKVIDQVI
ETFGRIDILV NNAGIHYECE DLAELVTEKM IATFETNVYS MFWITKYALP HLKAGSSIIN
SSSVTAYRGS KHLIDYAATK GAIVSFTRSL SSSLVDKGIR VNGVAPGPIW TPLIPSSFEE
DRVAKHGLNA PMHRAGEPSE VAPSYLFLAS EDASYITGQF LHPNGGEIIN G
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