| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1207 |
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| Symbol | |
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| ID | 7973377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1319327 |
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| End bp | 1320340 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791804 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002943124 |
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| Protein GI | 239814214 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCGA CCACCGCATC CCCCGCAAAA TCCACCCGGT CCGGCGCAAG CGCGCACACC
GCCGCCAAGC AGCGGACCGT CCAGCGCACG CAGGACGCAA AGGACAGCGC CAAGCCCGCC
GCCAAGAAGT CCAGCCAGCC CGCGCAGGCC GGGCCGCGCT CGCAGCCGGT CAATCCCCTG
CCGGCGCAGC ACCTGAGCAA GCCCGGGCTC GAGGCCGAGA TGGCGCTGCG CCCGCGCTTC
GAAGCGCCGG ACTACAAGGG CAGCGGCAAG CTCGAGGGCA TGGCGGCCCT GGTGACCGGC
GGCGATTCCG GCATCGGGCG CGCCGTGGCG CTGCTCTATG CCCGTGAAGG CGCCGACGTC
GCCATCGCCT ACCTCGACGA AGACGAGGAC GCCGAGGAAA CCCGGCGCCA CGTGGAGGCG
GAAGGCGCAC GCTGCATCCT CGTCAAGGGC GACGTCTGCG ATCCGGCGTT CTGCCGCGAC
GCGGTCGACC AGACGCTCGA GGCCTTCGGC AAGCTCGACA TCCTGGTGAA CAACGCGGCC
TTCCAGCTGC ATGCGGCGTC CATCGAGGAC ATCACCGACG AGCGCTTCGA ACTCACGCTT
CGGACCAACG TCTTCGGCTA TTTCCAGATG GCGCGCGCCG CGGTTCCGCA CCTGGGCCAG
GGCGCCTCGA TCATCAATAC CGGCTCGGTC ACGGGCCTGG AGGGCAGCGC GCACCTGCTC
GACTATTCGA CCACCAAGGG CGCGATCCAC GCGTTCACCA AGTCGCTGGC CAGCAACTTG
CTGCCCAAGG GTATCCGCGT GAATGCGGTG GCGCCCGGGC CGGTGTGGAC GCCTTTGAAT
CCCGCCGACA GCCCGTCCGG GAAGATCAAG GATTTCGGCA AGAACACCGA CCTGCAACGG
CCGGCGCAGC CGGAAGAGCT CTCGCCTGCC TACGTGTTCC TGGCCGCGCC GAGCTGCGCC
AGCTACATCA CCGGCATCGT GCTGCCGGTC ACGGGCAGCG TGGGCGCCGT CTGA
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| Protein sequence | MKSTTASPAK STRSGASAHT AAKQRTVQRT QDAKDSAKPA AKKSSQPAQA GPRSQPVNPL
PAQHLSKPGL EAEMALRPRF EAPDYKGSGK LEGMAALVTG GDSGIGRAVA LLYAREGADV
AIAYLDEDED AEETRRHVEA EGARCILVKG DVCDPAFCRD AVDQTLEAFG KLDILVNNAA
FQLHAASIED ITDERFELTL RTNVFGYFQM ARAAVPHLGQ GASIINTGSV TGLEGSAHLL
DYSTTKGAIH AFTKSLASNL LPKGIRVNAV APGPVWTPLN PADSPSGKIK DFGKNTDLQR
PAQPEELSPA YVFLAAPSCA SYITGIVLPV TGSVGAV
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