| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5291 |
|---|
| Symbol | |
|---|
| ID | 5195817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | - |
|---|
| Start bp | 191600 |
|---|
| End bp | 192451 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640579218 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001260166 |
|---|
| Protein GI | 148550727 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA CCCAGGGGAT GATTCACGAA GATGCGCTTC CGGGTCACGA GAGCGGTCTC
GATCCGCGGC CAGAGTGGCA ACCGCGCTAC AAGGGTTCCG ATCGCCTCGC GGGCAAGGTC
GCGATCATAA CCGGTGCTGA CAGCGGGATC GGCCGGGCGG TGGCGGCTCT CTATGCCCGG
GAAGGCGCCG ACATCGCGAT CGCTTATCTG TGCGAAGATG ACGACGCCGC CGAGACGAAG
CGCATCGTCG AGGCTGAAGG CCGCCAGGCG ATCACCATCC GAGGCGATAT CGGAGAAAAG
GATACTTCGG AGCGGATCGT CGCCGAGACG CTCAGCGCGT TCGGCAAAAT CGACATCCTG
GTCAACAATG CCGGCGAGCA GCATCCCGAC AAGGACATCA CCGACATTAC CGAGGAACAG
CTACGGCGCA CGTTCCAGAC CAACATCTTC GGGATGTTTT TCCTCGTCCA GGCGGCGCGG
CCGCATCTCA AGGAGGGCGC GGCCATCATC AACTGCACCT CGGTCACCAT GTACCAGGGT
TCAAAGGAGC TGCTCGACTA CAGTTCAACC AAGGGCGCCA TCACCGCCTT CACCCGCTCG
CTGTCCGAGA ACCTCGTCGG CGACGGCATT CGCGTCAATG CGGTGGCGCC GGGACCAATC
TGGACCCCGC TCAACCCCTG CGGCGGCGCC AGCCCGGAGA AGCTCGAGCA TTTTGGCGAG
AACACCCCGA TGGGCCGGCC CGGACAGCCC AACGAGGTCG CCCCCGCCTT CCTGTTCCTC
GCCTGCGACG ACTCCAGCTA CATGTCAGGG CAAGTCCTGC ATCCCAACGG CGGCACGATC
GTGAACGGTT AA
|
|---|
| Protein sequence | MSDTQGMIHE DALPGHESGL DPRPEWQPRY KGSDRLAGKV AIITGADSGI GRAVAALYAR
EGADIAIAYL CEDDDAAETK RIVEAEGRQA ITIRGDIGEK DTSERIVAET LSAFGKIDIL
VNNAGEQHPD KDITDITEEQ LRRTFQTNIF GMFFLVQAAR PHLKEGAAII NCTSVTMYQG
SKELLDYSST KGAITAFTRS LSENLVGDGI RVNAVAPGPI WTPLNPCGGA SPEKLEHFGE
NTPMGRPGQP NEVAPAFLFL ACDDSSYMSG QVLHPNGGTI VNG
|
|---|
| |