| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2925 |
|---|
| Symbol | |
|---|
| ID | 4203381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 3201879 |
|---|
| End bp | 3202769 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638083792 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | YP_697289 |
|---|
| Protein GI | 110799697 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAT ATTGTGATAA TAGTATAAAC TTTGAAAAGT TACCAAAGAA ATTCCCACCT
CAACATCAAT CAGTTCAACC TGGAATAGAA TCAATAATGG TTCCTAGTCC TATATTTGAT
AATCCTGATT ATAAGGGCAG TGAAAAATTA AAAGGAAAAT CAGTTCTTAT TACTGGTGGT
GATAGTGGAA TTGGTAGAGC AGTTTCTATA GCATTTGCAA AAGAAGGAGC AAATATTGTA
ATCTCTTATC TTTACGAAAA TGATGATGCT GAAACCACAA AGAAATATGT AGAAAAATAT
GGTGGAAAAT GCTACTTAGT TCCTGGTGAT ATTTCTAATA AAAACTTCTG TGAAAAATTA
GTTAGATTTA CAGTGGAAAC TTTAGGTGGG ATAGATGTTT TAATAAATAA TGCTGGAGTT
CAATTCCCTC AAAATAATAT AAACTGTATT TCACAAGAGC AACTTGAATT AACCTTTAAA
ATAAATATTT TCTCAATGTT CTATCTTACA CAAGAAGCTT TAAAATACAT GAAAAGAGGA
AGTACAATAG TAAATACTAC CTCTGTTACT GCTTACCAAG GCAAGGAAAA TCTTATAGAT
TACTCCTCAA CCAAAGGTGC TGTAGTTACC TTTACAAGAT CACTTTCACA ATCAATCGTT
AAAAATGGAA TAAGAGTTAA CGCAGTAGCT CCAGGTCCTA TTTGGACTCC TCTTATAGTA
TCAAGTTTTT CAGAGGAAGA AGTAGCTCGT TTTGGATCTG ATGTCCCAAT GAAACGTGCT
GGTCAACCTT TTGAACTCGC ACCAGCATAT GTCTACTTAG CATCTGATGA TTCCTCCTAC
GTAACAGGAC AAGTTCTTCA TGTAAATGGT GGAACTATGG TAGATAGTTA A
|
|---|
| Protein sequence | MNPYCDNSIN FEKLPKKFPP QHQSVQPGIE SIMVPSPIFD NPDYKGSEKL KGKSVLITGG
DSGIGRAVSI AFAKEGANIV ISYLYENDDA ETTKKYVEKY GGKCYLVPGD ISNKNFCEKL
VRFTVETLGG IDVLINNAGV QFPQNNINCI SQEQLELTFK INIFSMFYLT QEALKYMKRG
STIVNTTSVT AYQGKENLID YSSTKGAVVT FTRSLSQSIV KNGIRVNAVA PGPIWTPLIV
SSFSEEEVAR FGSDVPMKRA GQPFELAPAY VYLASDDSSY VTGQVLHVNG GTMVDS
|
|---|
| |