| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2306 |
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| Symbol | |
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| ID | 5108541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2542758 |
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| End bp | 2543612 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503548 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001187796 |
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| Protein GI | 146307331 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.361211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00000740353 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGACA AGACATTGCC CGCGCAGCAT CAGGACCGAC AACCCGGTCT CGAGCACGCC
ATGCATCCCG AACCCGTGTA CCTGTCCGAT AGCTACCGCG CCGCCGACAA GCTCGCCGGC
AAGGTGGCGA TCATCACCGG CGGCGACAGC GGCATCGGCC GCGCCGTCGC CGTGCATTAC
GCCCTGGAAG GGGCCAAGGT CGCGCTGGTC TATCTCGACG AGAACGAAGA CGCGCAAAAG
ACCGTGGACG AGGTGACCCG CCATGGCAGC GAGGCGATCG CCCTGGCCGG TGACGTGGGC
GACGCAGGCT TCTGCCAGTG CGTCGTCGAT GCGGTGATCG CCAAGTGGGG GCGCCTCGAC
ATCCTGATCA ACAACGCCGG CGAGCAGCAT CCCAAGGAAG ACCTGCTGGA GCTGGAGGAG
GCGGATTGGG AGCGCACCTT TCGCACCAAC ATCCTGGCCA TGTTCCAGCT CACCAAGGTA
GCGCTCAGGC ACCTGCAGTC GGGCGCCAGC ATCATCAACA CCAGCTCGGT CACGGCCTAC
AAGGGCAACC CCATGCTGCT CGACTACTCC TCGACCAAGG GCGCGATCAC CTCGTTCACC
CGCTCCCTGG CGATCAACCT GGCGCCGCGC GGCATCAGGG TCAACGGCGT GGCACCAGGA
CCGATCTGGA CACCCTTGAT CCCGTCCACC TTCAGCGCCG ACAAGGTCGC CGAGTTCGGC
GCCGACACCC CGCTGGGGCG CCCTGGGCAG CCCTCGGAAG TGGCCCCGGC CTACGTCTAC
CTGGCCAGCA ACGACGCCTC CTACATGACC GGGCAGATGC TCCACGTCAA CGGCGGCAGC
GTGGTCAATG GTTGA
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| Protein sequence | MNDKTLPAQH QDRQPGLEHA MHPEPVYLSD SYRAADKLAG KVAIITGGDS GIGRAVAVHY
ALEGAKVALV YLDENEDAQK TVDEVTRHGS EAIALAGDVG DAGFCQCVVD AVIAKWGRLD
ILINNAGEQH PKEDLLELEE ADWERTFRTN ILAMFQLTKV ALRHLQSGAS IINTSSVTAY
KGNPMLLDYS STKGAITSFT RSLAINLAPR GIRVNGVAPG PIWTPLIPST FSADKVAEFG
ADTPLGRPGQ PSEVAPAYVY LASNDASYMT GQMLHVNGGS VVNG
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