Gene Rpic12D_3818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3818 
Symbol 
ID8021505 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp385197 
End bp386057 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content65% 
IMG OID644832608 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002983749 
Protein GI241665390 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGACA CGCCAGCACA GCAACCGCCC CAACACCAGG ACCGCCAGCC CGGCACCCAG 
GAAGACATGA CGCCGCGCCC GCGCGCAGAC ATGGAGGACT ACGTGGGCAG CGGCAAACTC
AAGGACAAGG TCGCCATCGT CACCGGCGGC GACAGCGGTA TCGGCCGTGC GGTTGCCATC
GGCTTCGCCA AGGAAGGCGC CGACGTGCTG ATCGCCTACC TGGACGAACA CGACGACGCC
AACCAGACCT GCCGCCTTGT ACGCGCCACC GGCCGCCGCT GCGAAGCCAT TGCCGGCGAC
CTGGGCGACG AAGCGCATGC CCGCGCGGTG GTCACGCAGG CGGTGGCCAT GTTCGGCAAG
ATCGACATCG TCGTGAGCAA CGCCGCCGAG CAGCACCCGC AGCAAAGCCT GGCCGACATC
AATGCCGACC AGCTGGAGCG CACGTTCCGC ACCAACGTTT TCGCGATGTT CCATCTGCTG
CGTGCCGCGC TGCCCCATCT GCACGAAGGC GCACGCATCA TCACCACCAC GTCGGTCACC
GCATTTCGCG GCAGCGGCCA CCTGGTGGAT TACGCAGCCA CGAAGGGAGC GATCCTGGCC
TTCACGCGTT CGCTCGCCCA GCAACTGGCC GAAAAGAACA TCCTGGTGAA TGCCGTGGCG
CAAGGCCCGA TCTGGACGCC GTTGATTCCG TCGACCTTCG ATGCCGAGCA TGTCGTCCAA
TTCGGCAGCA AGGAGCCACT GGCCCGGGCT GGCCAGCCGG ATGAAGTGGC CCCTTGCTAC
ATCTTTCTCG CGTCTGCCGA TGCGAGTTAC ATGACGGGGC AGACGCTGCA TCCGAATGGG
GGGGAGATCG TCAATGGGTA A
 
Protein sequence
MPDTPAQQPP QHQDRQPGTQ EDMTPRPRAD MEDYVGSGKL KDKVAIVTGG DSGIGRAVAI 
GFAKEGADVL IAYLDEHDDA NQTCRLVRAT GRRCEAIAGD LGDEAHARAV VTQAVAMFGK
IDIVVSNAAE QHPQQSLADI NADQLERTFR TNVFAMFHLL RAALPHLHEG ARIITTTSVT
AFRGSGHLVD YAATKGAILA FTRSLAQQLA EKNILVNAVA QGPIWTPLIP STFDAEHVVQ
FGSKEPLARA GQPDEVAPCY IFLASADASY MTGQTLHPNG GEIVNG