More than 300 homologs were found in PanDaTox collection
for query gene PCC7424_2841 on replicon NC_011729
Organism: Cyanothece sp. PCC 7424



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  100 
 
 
308 aa  634    Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_011726  PCC8801_1475  response regulator receiver modulated GAF sensor protein  45.21 
 
 
311 aa  276  3e-73  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1502  response regulator receiver modulated GAF sensor protein  45.21 
 
 
311 aa  276  3e-73  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2205  multi-sensor hybrid histidine kinase  34.6 
 
 
887 aa  174  1.9999999999999998e-42  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.188088 
 
 
-
 
NC_007413  Ava_1030  response regulator receiver modulated diguanylate cyclase  47.06 
 
 
330 aa  148  1.0000000000000001e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.33399 
 
 
-
 
NC_007413  Ava_3170  response regulator receiver modulated diguanylate cyclase  46.62 
 
 
344 aa  134  1.9999999999999998e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.103544 
 
 
-
 
NC_012918  GM21_2710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.17 
 
 
704 aa  132  6.999999999999999e-30  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00325078 
 
 
-
 
NC_011146  Gbem_1506  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.17 
 
 
704 aa  132  7.999999999999999e-30  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4328  multi-sensor signal transduction histidine kinase  48.12 
 
 
612 aa  131  2.0000000000000002e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  37.35 
 
 
734 aa  130  3e-29  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_007520  Tcr_0166  response regulator receiver/GGDEF/EAL domain-containing protein  44.14 
 
 
697 aa  130  3e-29  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1271  hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase  43.75 
 
 
1499 aa  126  5e-28  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.422796  n/a   
 
 
-
 
NC_002939  GSU1038  sensory box histidine kinase/response regulator  40.79 
 
 
513 aa  125  8.000000000000001e-28  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1597  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.55 
 
 
860 aa  125  8.000000000000001e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.711633  n/a   
 
 
-
 
NC_008609  Ppro_0902  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.18 
 
 
718 aa  124  1e-27  Pelobacter propionicus DSM 2379  Bacteria  normal  0.651526  n/a   
 
 
-
 
NC_010551  BamMC406_1617  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.85 
 
 
860 aa  122  6e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3542  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.67 
 
 
590 aa  122  6e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3534  response regulator receiver protein  35.03 
 
 
393 aa  122  8e-27  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2857  sensory box/response regulator  38.62 
 
 
754 aa  121  1.9999999999999998e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.917485  normal 
 
 
-
 
NC_008576  Mmc1_1710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  46.61 
 
 
720 aa  119  3.9999999999999996e-26  Magnetococcus sp. MC-1  Bacteria  normal  0.425295  normal 
 
 
-
 
NC_008709  Ping_3328  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.54 
 
 
711 aa  118  9.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_4005  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.31 
 
 
696 aa  118  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1037  sensory box/response regulator  37.96 
 
 
799 aa  116  6e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3848  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.46 
 
 
703 aa  116  6e-25  Thauera sp. MZ1T  Bacteria  normal  0.343403  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  28.98 
 
 
566 aa  115  7.999999999999999e-25  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_007298  Daro_2788  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.93 
 
 
715 aa  113  4.0000000000000004e-24  Dechloromonas aromatica RCB  Bacteria  normal  0.941936  normal 
 
 
-
 
NC_007404  Tbd_1269  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.31 
 
 
705 aa  113  4.0000000000000004e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2717  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.1 
 
 
720 aa  108  8.000000000000001e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00595541 
 
 
-
 
NC_009457  VC0395_A0150  sensory box sensor histidine kinase/response regulator  37.41 
 
 
1177 aa  108  1e-22  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  40.6 
 
 
222 aa  107  2e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  38.57 
 
 
1127 aa  106  6e-22  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  36.09 
 
 
303 aa  103  3e-21  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_009952  Dshi_2820  response regulator  42.24 
 
 
462 aa  103  4e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.229785  normal  0.330149 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  38.84 
 
 
316 aa  102  5e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  41.73 
 
 
312 aa  103  5e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  39.33 
 
 
397 aa  102  6e-21  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  40.14 
 
 
331 aa  102  9e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03422  hypothetical protein  36.3 
 
 
1128 aa  102  1e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  44.92 
 
 
460 aa  101  2e-20  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  39.31 
 
 
337 aa  100  2e-20  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  34.1 
 
 
443 aa  100  2e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  32.29 
 
 
229 aa  100  3e-20  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2699  response regulator receiver modulated metal dependent phosphohydrolase  39.86 
 
 
328 aa  100  4e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  31.15 
 
 
243 aa  99.8  5e-20  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  37.16 
 
 
619 aa  99.8  5e-20  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  31.15 
 
 
243 aa  99.8  5e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  36.29 
 
 
311 aa  99.8  6e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  39.07 
 
 
200 aa  99  8e-20  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002587  chitin catabolic cascade sensor histidine kinase ChiS  34.25 
 
 
1111 aa  99  9e-20  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  39.44 
 
 
390 aa  98.6  1e-19  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  39.34 
 
 
339 aa  99  1e-19  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  35.77 
 
 
309 aa  98.6  1e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_009523  RoseRS_4619  two component transcriptional regulator  41.38 
 
 
245 aa  97.8  2e-19  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0926269 
 
 
-
 
NC_010505  Mrad2831_2672  multi-sensor hybrid histidine kinase  42.02 
 
 
991 aa  97.4  2e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.646953  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  41.13 
 
 
470 aa  98.2  2e-19  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  38.13 
 
 
705 aa  97.8  2e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1777  metal dependent phosphohydrolase, HD region with response regulator receiver modulation  38.97 
 
 
414 aa  97.4  2e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0316  DNA-binding response regulator  39.26 
 
 
237 aa  97.8  2e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1135  two component transcriptional regulator, winged helix family  40.71 
 
 
227 aa  97.8  2e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_0421  two component transcriptional regulator  41.38 
 
 
245 aa  98.2  2e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0518956  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  38.89 
 
 
297 aa  97.8  2e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008819  NATL1_02061  two-component response regulator  38.97 
 
 
248 aa  97.8  2e-19  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.540525 
 
 
-
 
NC_008820  P9303_26531  two-component response regulator  39.67 
 
 
248 aa  97.8  2e-19  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  40.52 
 
 
242 aa  97.4  2e-19  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_011138  MADE_01717  putative response regulator  35.15 
 
 
568 aa  97.1  3e-19  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1927  sensory box/response regulator  42.31 
 
 
660 aa  97.4  3e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3111  response regulator receiver protein  37.58 
 
 
328 aa  97.4  3e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0637882 
 
 
-
 
NC_011145  AnaeK_0640  response regulator receiver protein  37.93 
 
 
123 aa  97.1  3e-19  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
367 aa  97.4  3e-19  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0606  response regulator receiver domain-containing protein  37.07 
 
 
123 aa  97.1  3e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  36.3 
 
 
349 aa  97.4  3e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  31.15 
 
 
243 aa  97.1  3e-19  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_011884  Cyan7425_4555  response regulator receiver sensor signal transduction histidine kinase  38.17 
 
 
406 aa  97.1  4e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.330139  normal  0.677797 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  43.97 
 
 
348 aa  97.1  4e-19  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  38.33 
 
 
306 aa  96.7  4e-19  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011891  A2cp1_0631  response regulator receiver protein  37.07 
 
 
123 aa  96.7  4e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  34.13 
 
 
361 aa  96.7  4e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  39.67 
 
 
309 aa  96.3  5e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  30.6 
 
 
247 aa  96.3  5e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007335  PMN2A_1500  two component transcriptional regulator  38.24 
 
 
248 aa  96.7  5e-19  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  40.52 
 
 
242 aa  96.7  5e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  36.43 
 
 
234 aa  96.3  6e-19  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  41.38 
 
 
229 aa  96.3  6e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  36.43 
 
 
234 aa  96.3  6e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  30.6 
 
 
244 aa  96.3  6e-19  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_010184  BcerKBAB4_2911  two component transcriptional regulator  40.52 
 
 
228 aa  95.9  7e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  36.76 
 
 
317 aa  95.9  7e-19  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3637  two component transcriptional regulator, winged helix family  43.22 
 
 
246 aa  95.9  8e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  40.15 
 
 
376 aa  95.9  8e-19  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_008148  Rxyl_2983  two component transcriptional regulator  39.84 
 
 
228 aa  95.9  8e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  36.99 
 
 
202 aa  95.9  9e-19  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  40.52 
 
 
229 aa  95.9  9e-19  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  41.73 
 
 
236 aa  95.1  1e-18  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  37.84 
 
 
308 aa  95.1  1e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1498  two component transcriptional regulator  42.37 
 
 
247 aa  95.5  1e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.220919  normal 
 
 
-
 
NC_011772  BCG9842_B4998  DNA-binding response regulator  38.52 
 
 
237 aa  95.5  1e-18  Bacillus cereus G9842  Bacteria  normal  0.709524  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  29.85 
 
 
440 aa  95.1  1e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_011726  PCC8801_1936  two component transcriptional regulator, winged helix family  42.37 
 
 
246 aa  95.5  1e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1963  two component transcriptional regulator, winged helix family  42.37 
 
 
246 aa  95.5  1e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.470012 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  38.32 
 
 
333 aa  95.5  1e-18  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
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