Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU1927 |
Symbol | |
ID | 2688352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 2105212 |
End bp | 2107194 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637126618 |
Product | sensory box/response regulator |
Protein accession | NP_952976 |
Protein GI | 39997025 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAGCC GGCTTGTTCC CGACATCATC CTGCTCGATG TAGTAATGCC CGGCATGGGG GGATTTGATG TCTGCCGGCG TATTCGCCGT CTGCCGGGAG GAGACCGCGT CCAGATCCTC GTTATGACGA GTCTCGATGA TACCGGTGCC ATTGATGAAG CCTACGAGGC AGGGGCTTCG GACTTCCTGG CCAAGCCGAT CGACTGGGTT CTGCTGCCCC GCCGTATCCG TTATCTACTG CGCGCCAAAC TCGCTTTCGA TGAGCTTCAC AAGAGCAGGA CCATGCTGTA CAACGCTCAA CGCATTGCTC GCCTGGGAAA CTGGGAGTTC GACCTGGAGA CCAACGTCTT TACCTGCTCC GAGGAATCGT GCCGCATTTT CGGCATCAGG GACCATCGGC AGGGGAAGAG TCACCGGGCC CTGATGCGCC GGGTGCATCC CGAAGACCGG GTAACGGTCA AGAAGGCCAT CTTTCAGGCG TTCCGGACCG GTGTCGGCTA CTGCATGGAT CACCGGATCG TTCTCGATGA TGGTGTTGAG CGGATCGTCA GCCAGCATGC CGAGCTTCTG TCCGCAGATG ACGGGCGGAC GTCAAGGCTG GTCGGAACGG TCCACGACAT AACCGAGCGA ACCCTTGCCG AGGAGCGGAT TCGCTACCTT GCCCATCACG ATACTCTGAC GGCACTGCCC AACCGGTTCC AGTTCGAGGA GCGAATGGAA CAGGCCCTGG CCTTTGCCCA GCGCAACGGC TTCATGATGG CAGTCCTGTT CCTGGATCTC GACCACTTCA AAAAGGTGAA CGATACTCTG GGGCATCATG CGGGCGACCG GCTGCTTCAG GAGGCGGCCG GCCGGCTTAT GAAATGCCTG CGGCGCAGCG ATACGCTCAC CCACGCTTCC CGCGAGGATG CGAGCCCCTT CATCTCCCGC ATGGGCGGGG ACGAGTTCAC CATTCTGCTG ACCGATCTGG CCCACCCCCA GGATGCCGCC AGGGTCTCGC AACGCATCAT CACCGCCCTG TCCAAGCGTT ATGTGATCGG CGGCCACGAG GTTTTCGTGG GGGCAAGCAT CGGCATCAGT CTCTTTCCCT CCGACGGCGA GGACTGCGAT CAGCTTTTGC GTAACGCGGA TACGGCCATG TATCACGCCA AAGAACTGGG CCGCAATACC TATCAGTACT ATTCGGGCTC TATGAACGCC ATGGCGCTCG AGCGGCTGAC CCTGGAAAAC AACCTGCGCT GGGCGCTCAA ACGGAATGAA TTCCGCCTCT GCTACCAACC ACAGCTGGAT GCGGCCTCGG GGCGCGTGGT GGGGATGGAG GCTCTGCTGA GCTGGCATCG GCCGGGGTGT GATGTAGTCC CGCCTGACGA TTTCATCCCC TTGGCCGAGG AAACCGGCCT TATCGCATCG ATTGGCGAGT GGGTCCTCTG GAACGCTTGT GCCCAGGCGG TTACCTGGCT CCACGAGGGG CTCCCGCCGG TACGGGTGGC GGTCAATCTT TCCAGCCTCC AATTCCGGTC GCGTCGTTTG GCCGAGTTGG TGAGGAAGGT GCTGCGCGCC ACCGGGTTGC CGCCATCGCA TCTGGAGCTG GAGATTACCG AGGGGGTCTT CATGTCCAAC GAAGAGGATG CTGCTGTTGT CATTCGCGAC CTAAAGAAGA TGGGGGTCCG CTTTTCCGTC GACGATTTCG GCACCGGCTA CTCTTCCCTC AGCAGGCTGT CGCGCTTCCC GCTCGATGCT CTCAAGATCG ACCGCTCCTT TGTCCGTGAC ATTTCAGCCG ATCCGGCCGC GGCGGGCCTC ACAGCCGCCA TTATTGCCAT GGCCCGCAAT CTCGGCCTGA ATGTTATTGC CGAAGGGGTC GAAACCCATG AACAGTTTGC CTTTCTCCGG GCAAACGGCT GCGCCGAAGT ACAGGGATTC CTCTTCAGTC AGCCGCTTAA CCCTGATGCA GCCGCAGCGT TCCTGCGCGC TCGGTCGCGC TAG
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Protein sequence | MFSRLVPDII LLDVVMPGMG GFDVCRRIRR LPGGDRVQIL VMTSLDDTGA IDEAYEAGAS DFLAKPIDWV LLPRRIRYLL RAKLAFDELH KSRTMLYNAQ RIARLGNWEF DLETNVFTCS EESCRIFGIR DHRQGKSHRA LMRRVHPEDR VTVKKAIFQA FRTGVGYCMD HRIVLDDGVE RIVSQHAELL SADDGRTSRL VGTVHDITER TLAEERIRYL AHHDTLTALP NRFQFEERME QALAFAQRNG FMMAVLFLDL DHFKKVNDTL GHHAGDRLLQ EAAGRLMKCL RRSDTLTHAS REDASPFISR MGGDEFTILL TDLAHPQDAA RVSQRIITAL SKRYVIGGHE VFVGASIGIS LFPSDGEDCD QLLRNADTAM YHAKELGRNT YQYYSGSMNA MALERLTLEN NLRWALKRNE FRLCYQPQLD AASGRVVGME ALLSWHRPGC DVVPPDDFIP LAEETGLIAS IGEWVLWNAC AQAVTWLHEG LPPVRVAVNL SSLQFRSRRL AELVRKVLRA TGLPPSHLEL EITEGVFMSN EEDAAVVIRD LKKMGVRFSV DDFGTGYSSL SRLSRFPLDA LKIDRSFVRD ISADPAAAGL TAAIIAMARN LGLNVIAEGV ETHEQFAFLR ANGCAEVQGF LFSQPLNPDA AAAFLRARSR
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