More than 300 homologs were found in PanDaTox collection
for query gene PC1_4161 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012880  Dd703_0071  methyl-accepting chemotaxis sensory transducer  61.87 
 
 
630 aa  746    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0055  methyl-accepting chemotaxis sensory transducer  60.19 
 
 
628 aa  732    Dickeya zeae Ech1591  Bacteria  normal  0.608397  n/a   
 
 
-
 
NC_009832  Spro_0080  methyl-accepting chemotaxis sensory transducer  57.48 
 
 
642 aa  645    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4161  methyl-accepting chemotaxis sensory transducer  100 
 
 
628 aa  1274    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_4122  methyl-accepting chemotaxis protein  58.56 
 
 
649 aa  704    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0034  methyl-accepting chemotaxis sensory transducer  58.56 
 
 
649 aa  704    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.38678  n/a   
 
 
-
 
NC_013421  Pecwa_4443  methyl-accepting chemotaxis sensory transducer  92.82 
 
 
630 aa  1134    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3774  methyl-accepting chemotaxis protein  58.88 
 
 
649 aa  678    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  50.32 
 
 
651 aa  539  9.999999999999999e-153  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_012880  Dd703_2081  methyl-accepting chemotaxis sensory transducer  47.53 
 
 
668 aa  525  1e-148  Dickeya dadantii Ech703  Bacteria  normal  0.622232  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  49.25 
 
 
661 aa  520  1e-146  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1838  methyl-accepting chemotaxis sensory transducer  47.95 
 
 
667 aa  513  1e-144  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1806  methyl-accepting chemotaxis sensory transducer  46.51 
 
 
652 aa  488  1e-136  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0769  methyl-accepting chemotaxis sensory transducer  58.41 
 
 
505 aa  466  9.999999999999999e-131  Dickeya zeae Ech1591  Bacteria  normal  0.0409416  n/a   
 
 
-
 
NC_012912  Dd1591_2086  methyl-accepting chemotaxis sensory transducer  44.05 
 
 
653 aa  439  9.999999999999999e-123  Dickeya zeae Ech1591  Bacteria  normal  0.0240769  n/a   
 
 
-
 
NC_013421  Pecwa_4454  methyl-accepting chemotaxis sensory transducer  43.46 
 
 
653 aa  439  9.999999999999999e-123  Pectobacterium wasabiae WPP163  Bacteria  normal  0.625525  n/a   
 
 
-
 
NC_012917  PC1_4172  methyl-accepting chemotaxis sensory transducer  43.94 
 
 
653 aa  439  9.999999999999999e-123  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2019  methyl-accepting chemotaxis sensory transducer  42.38 
 
 
644 aa  436  1e-121  Pectobacterium wasabiae WPP163  Bacteria  normal  0.858801  n/a   
 
 
-
 
NC_012917  PC1_3443  methyl-accepting chemotaxis sensory transducer  59.25 
 
 
511 aa  424  1e-117  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.330959  n/a   
 
 
-
 
NC_013421  Pecwa_3600  methyl-accepting chemotaxis sensory transducer  68.21 
 
 
510 aa  424  1e-117  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2327  methyl-accepting chemotaxis sensory transducer  42.51 
 
 
655 aa  421  1e-116  Dickeya zeae Ech1591  Bacteria  normal  0.716134  n/a   
 
 
-
 
NC_009436  Ent638_2100  methyl-accepting chemotaxis sensory transducer  63.58 
 
 
512 aa  412  1e-113  Enterobacter sp. 638  Bacteria  normal  0.0381834  normal 
 
 
-
 
NC_012912  Dd1591_1776  methyl-accepting chemotaxis sensory transducer  40.56 
 
 
654 aa  377  1e-103  Dickeya zeae Ech1591  Bacteria  normal  0.840752  n/a   
 
 
-
 
NC_010498  EcSMS35_1753  methyl-accepting chemotaxis protein III  63.55 
 
 
546 aa  370  1e-101  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  2.79367e-17 
 
 
-
 
CP001509  ECD_01378  methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor  63.24 
 
 
546 aa  368  1e-100  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2225  methyl-accepting chemotaxis sensory transducer  63.24 
 
 
546 aa  368  1e-100  Escherichia coli DH1  Bacteria  normal  0.213228  n/a   
 
 
-
 
NC_009801  EcE24377A_1600  methyl-accepting chemotaxis protein III  63.24 
 
 
546 aa  368  1e-100  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  53.14 
 
 
583 aa  369  1e-100  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_012917  PC1_3679  methyl-accepting chemotaxis sensory transducer  60 
 
 
567 aa  368  1e-100  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2238  methyl-accepting chemotaxis sensory transducer  62.93 
 
 
546 aa  366  1e-100  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_01390  hypothetical protein  63.24 
 
 
546 aa  368  1e-100  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2026  methyl-accepting chemotaxis protein III  62.93 
 
 
470 aa  367  1e-100  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000000214401 
 
 
-
 
NC_009800  EcHS_A1503  methyl-accepting chemotaxis protein III  62.93 
 
 
546 aa  365  1e-99  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  56.42 
 
 
569 aa  364  2e-99  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  55.38 
 
 
555 aa  363  6e-99  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  60 
 
 
557 aa  363  7.0000000000000005e-99  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  60 
 
 
557 aa  363  7.0000000000000005e-99  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3873  methyl-accepting chemotaxis sensory transducer  57.94 
 
 
575 aa  362  1e-98  Pectobacterium wasabiae WPP163  Bacteria  normal  0.460221  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  57.88 
 
 
566 aa  360  3e-98  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_010465  YPK_1742  methyl-accepting chemotaxis sensory transducer  62.04 
 
 
579 aa  360  3e-98  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  59.69 
 
 
557 aa  361  3e-98  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_009708  YpsIP31758_1631  methyl-accepting chemotaxis protein  62.04 
 
 
579 aa  360  4e-98  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3123  methyl-accepting chemotaxis sensory transducer  60.62 
 
 
555 aa  358  9.999999999999999e-98  Pectobacterium wasabiae WPP163  Bacteria  decreased coverage  0.000142041  n/a   
 
 
-
 
NC_013421  Pecwa_1849  methyl-accepting chemotaxis sensory transducer  66.56 
 
 
570 aa  358  1.9999999999999998e-97  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2018  methyl-accepting chemotaxis sensory transducer  61.15 
 
 
650 aa  357  2.9999999999999997e-97  Pectobacterium wasabiae WPP163  Bacteria  normal  0.894021  n/a   
 
 
-
 
NC_012912  Dd1591_1535  methyl-accepting chemotaxis sensory transducer  58.92 
 
 
574 aa  356  8.999999999999999e-97  Dickeya zeae Ech1591  Bacteria  normal  0.241891  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  51.27 
 
 
559 aa  355  2e-96  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  55.43 
 
 
542 aa  353  5e-96  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2983  methyl-accepting chemotaxis sensory transducer  58 
 
 
556 aa  351  2e-95  Serratia proteamaculans 568  Bacteria  normal  0.96835  normal 
 
 
-
 
NC_012880  Dd703_1507  methyl-accepting chemotaxis sensory transducer  62.04 
 
 
573 aa  350  3e-95  Dickeya dadantii Ech703  Bacteria  normal  0.273861  n/a   
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  56.34 
 
 
555 aa  351  3e-95  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  56.69 
 
 
562 aa  350  4e-95  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  57.06 
 
 
584 aa  350  5e-95  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  58.99 
 
 
562 aa  350  7e-95  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  55.37 
 
 
578 aa  348  2e-94  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_011094  SeSA_A1744  methyl-accepting chemotaxis protein III  62.7 
 
 
535 aa  348  2e-94  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.693576  normal  0.460124 
 
 
-
 
NC_009436  Ent638_1858  methyl-accepting chemotaxis sensory transducer  54.07 
 
 
552 aa  348  2e-94  Enterobacter sp. 638  Bacteria  normal  normal  0.332391 
 
 
-
 
NC_011080  SNSL254_A1740  methyl-accepting chemotaxis protein III  62.7 
 
 
541 aa  347  3e-94  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  56.03 
 
 
559 aa  347  3e-94  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_011149  SeAg_B1531  methyl-accepting chemotaxis protein III  62.7 
 
 
541 aa  347  3e-94  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1298  methyl-accepting chemotaxis protein II  57.55 
 
 
553 aa  347  3e-94  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00038087 
 
 
-
 
NC_011083  SeHA_C1804  methyl-accepting chemotaxis protein III  62.7 
 
 
535 aa  347  3e-94  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1716  methyl-accepting chemotaxis protein III  62.7 
 
 
541 aa  347  4e-94  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0288519 
 
 
-
 
NC_012917  PC1_2617  methyl-accepting chemotaxis sensory transducer  66.78 
 
 
573 aa  347  6e-94  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.38785  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  47.82 
 
 
572 aa  346  7e-94  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_012912  Dd1591_3580  methyl-accepting chemotaxis sensory transducer  57.01 
 
 
572 aa  346  7e-94  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  56.67 
 
 
554 aa  343  7e-93  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_011080  SNSL254_A4887  methyl-accepting chemotaxis protein I  56.16 
 
 
553 aa  342  8e-93  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4939  methyl-accepting chemotaxis protein I  56.16 
 
 
553 aa  342  8e-93  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.188217  normal 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  55.98 
 
 
527 aa  343  8e-93  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  52.59 
 
 
587 aa  342  1e-92  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  55.97 
 
 
595 aa  342  1e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_013421  Pecwa_1857  methyl-accepting chemotaxis sensory transducer  57.31 
 
 
561 aa  342  1e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  0.769355  n/a   
 
 
-
 
NC_009436  Ent638_1961  methyl-accepting chemotaxis sensory transducer  61.61 
 
 
563 aa  342  1e-92  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4946  methyl-accepting chemotaxis protein I  58.36 
 
 
553 aa  341  2.9999999999999998e-92  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.556415 
 
 
-
 
NC_011094  SeSA_A4786  methyl-accepting chemotaxis protein I  58.36 
 
 
553 aa  340  4e-92  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.709187  normal 
 
 
-
 
NC_012880  Dd703_2509  methyl-accepting chemotaxis sensory transducer  57.98 
 
 
557 aa  339  7e-92  Dickeya dadantii Ech703  Bacteria  normal  0.377261  n/a   
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  54.98 
 
 
553 aa  339  9e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  53.26 
 
 
554 aa  338  9.999999999999999e-92  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1203  methyl-accepting chemotaxis protein II  59.09 
 
 
553 aa  338  9.999999999999999e-92  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.697919  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  56.55 
 
 
580 aa  338  9.999999999999999e-92  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  51.94 
 
 
584 aa  338  1.9999999999999998e-91  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2074  methyl-accepting chemotaxis protein II  59.15 
 
 
553 aa  337  2.9999999999999997e-91  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.162752  hitchhiker  0.000345874 
 
 
-
 
NC_011205  SeD_A1326  methyl-accepting chemotaxis protein II  59.15 
 
 
553 aa  337  2.9999999999999997e-91  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.452066  hitchhiker  2.3261e-17 
 
 
-
 
NC_011083  SeHA_C2134  methyl-accepting chemotaxis protein II  59.15 
 
 
553 aa  337  2.9999999999999997e-91  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  1.16019e-17 
 
 
-
 
NC_012880  Dd703_2308  methyl-accepting chemotaxis sensory transducer  53.31 
 
 
560 aa  337  3.9999999999999995e-91  Dickeya dadantii Ech703  Bacteria  normal  0.52721  n/a   
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  51.54 
 
 
596 aa  337  3.9999999999999995e-91  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0007  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.92 
 
 
636 aa  337  5e-91  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2609  methyl-accepting chemotaxis sensory transducer  46.88 
 
 
561 aa  337  5e-91  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_04232  methyl-accepting chemotaxis protein I, serine sensor receptor  50.98 
 
 
551 aa  336  5.999999999999999e-91  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04198  hypothetical protein  50.98 
 
 
551 aa  336  5.999999999999999e-91  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0562  methyl-accepting chemotaxis sensory transducer  58.08 
 
 
570 aa  336  5.999999999999999e-91  Dickeya dadantii Ech703  Bacteria  decreased coverage  0.00821394  n/a   
 
 
-
 
NC_011080  SNSL254_A2079  methyl-accepting chemotaxis protein II  59.15 
 
 
553 aa  337  5.999999999999999e-91  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.429347  hitchhiker  1.96177e-16 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  56.11 
 
 
513 aa  336  5.999999999999999e-91  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  59.25 
 
 
575 aa  336  7e-91  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  44.78 
 
 
548 aa  336  7e-91  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  54.43 
 
 
549 aa  336  7e-91  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  54.31 
 
 
653 aa  336  7.999999999999999e-91  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  48.9 
 
 
543 aa  335  1e-90  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2982  methyl-accepting chemotaxis sensory transducer  49.31 
 
 
541 aa  335  1e-90  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
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