More than 300 homologs were found in PanDaTox collection
for query gene Noca_2070 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_2070  binding-protein-dependent transport systems inner membrane component  100 
 
 
271 aa  511  1e-144  Nocardioides sp. JS614  Bacteria  normal  0.220299  n/a   
 
 
-
 
NC_009380  Strop_4233  binding-protein-dependent transport systems inner membrane component  43.63 
 
 
289 aa  151  1e-35  Salinispora tropica CNB-440  Bacteria  normal  normal  0.521193 
 
 
-
 
NC_009972  Haur_1234  binding-protein-dependent transport systems inner membrane component  47.06 
 
 
261 aa  149  4e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3705  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
270 aa  124  2e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.124345  n/a   
 
 
-
 
NC_012917  PC1_0182  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
268 aa  119  3.9999999999999996e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0180  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
283 aa  108  1e-22  Marinomonas sp. MWYL1  Bacteria  normal  0.93964  normal 
 
 
-
 
NC_011988  Avi_5611  ABC transporter membrane spanning protein (sugar)  33.91 
 
 
269 aa  105  9e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  35.63 
 
 
264 aa  100  3e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  35.63 
 
 
264 aa  100  3e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_013223  Dret_2124  binding-protein-dependent transport systems inner membrane component  35.47 
 
 
271 aa  99.8  4e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.493123 
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
263 aa  96.7  3e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_007519  Dde_0309  ABC transporter, permease protein, putative  39.74 
 
 
260 aa  95.9  6e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3736  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
276 aa  94.4  2e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.282406  normal 
 
 
-
 
NC_010338  Caul_3949  ornithine carbamoyltransferase  28.11 
 
 
287 aa  93.6  3e-18  Caulobacter sp. K31  Bacteria  normal  0.551991  normal 
 
 
-
 
NC_008786  Veis_0786  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
265 aa  92  9e-18  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6091  ABC transporter membrane spanning protein (polyamine)  31.94 
 
 
266 aa  91.7  1e-17  Agrobacterium vitis S4  Bacteria  normal  0.417915  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  31.41 
 
 
282 aa  90.9  2e-17  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0623  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
285 aa  91.3  2e-17  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.587185  n/a   
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
282 aa  90.9  2e-17  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4294  binding-protein-dependent transport systems inner membrane component  29.65 
 
 
279 aa  90.9  2e-17  Burkholderia ambifaria AMMD  Bacteria  normal  0.144254  normal 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  31.41 
 
 
282 aa  90.5  2e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1612  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
307 aa  90.1  3e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.142547 
 
 
-
 
NC_008390  Bamb_1593  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
307 aa  90.1  3e-17  Burkholderia ambifaria AMMD  Bacteria  normal  0.0707466  n/a   
 
 
-
 
NC_011989  Avi_2178  ABC transporter membrane spanning protein  29.41 
 
 
288 aa  90.1  4e-17  Agrobacterium vitis S4  Bacteria  normal  0.178146  n/a   
 
 
-
 
NC_010622  Bphy_2380  binding-protein-dependent transport systems inner membrane component  30.05 
 
 
279 aa  90.1  4e-17  Burkholderia phymatum STM815  Bacteria  normal  0.576146  normal 
 
 
-
 
NC_011661  Dtur_0521  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
270 aa  89.4  6e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4946  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
264 aa  89.4  6e-17  Paracoccus denitrificans PD1222  Bacteria  normal  0.650523  normal 
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
264 aa  88.2  1e-16  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_013922  Nmag_0084  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
272 aa  88.6  1e-16  Natrialba magadii ATCC 43099  Archaea  normal  0.0395984  n/a   
 
 
-
 
NC_010625  Bphy_7062  binding-protein-dependent transport systems inner membrane component  39.07 
 
 
593 aa  88.2  1e-16  Burkholderia phymatum STM815  Bacteria  normal  normal  0.156031 
 
 
-
 
CP001800  Ssol_1978  binding-protein-dependent transport systems inner membrane component  30.5 
 
 
267 aa  87.8  2e-16  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4848  ABC transporter, inner membrane subunit  32.52 
 
 
310 aa  87.8  2e-16  Burkholderia sp. 383  Bacteria  normal  0.432693  hitchhiker  0.000811543 
 
 
-
 
NC_009654  Mmwyl1_2486  binding-protein-dependent transport systems inner membrane component  29.19 
 
 
268 aa  87.4  2e-16  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  29.41 
 
 
264 aa  87  3e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  28.96 
 
 
264 aa  87  3e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_011371  Rleg2_6578  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
275 aa  87  3e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.415654 
 
 
-
 
NC_010623  Bphy_4446  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
301 aa  86.7  4e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
269 aa  86.7  4e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  30.52 
 
 
269 aa  86.3  5e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_010084  Bmul_1559  binding-protein-dependent transport systems inner membrane component  32 
 
 
307 aa  86.3  5e-16  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.37571  normal  0.155307 
 
 
-
 
NC_013173  Dbac_0789  binding-protein-dependent transport systems inner membrane component  38.97 
 
 
260 aa  86.3  5e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.291957  n/a   
 
 
-
 
NC_012848  Rleg_5387  binding-protein-dependent transport systems inner membrane component  33.17 
 
 
285 aa  85.9  7e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.76333 
 
 
-
 
NC_007802  Jann_4107  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
261 aa  85.9  7e-16  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1208  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
307 aa  85.9  7e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1687  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
307 aa  85.9  7e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1659  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
307 aa  85.9  7e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.761483  normal  0.336927 
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
264 aa  85.9  7e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
264 aa  85.5  8e-16  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_008698  Tpen_1548  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
270 aa  85.5  8e-16  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_012852  Rleg_6034  binding-protein-dependent transport systems inner membrane component  25 
 
 
259 aa  85.5  9e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.958438 
 
 
-
 
NC_009440  Msed_1287  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
266 aa  84  0.000000000000002  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
264 aa  84  0.000000000000002  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
264 aa  84.3  0.000000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_013510  Tcur_0448  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
275 aa  84.3  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
264 aa  84.3  0.000000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  30.05 
 
 
264 aa  84  0.000000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_007802  Jann_1271  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
337 aa  83.6  0.000000000000003  Jannaschia sp. CCS1  Bacteria  normal  0.494716  normal  0.616088 
 
 
-
 
NC_008048  Sala_1115  binding-protein-dependent transport systems inner membrane component  26.44 
 
 
281 aa  84  0.000000000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.360283  normal 
 
 
-
 
NC_010465  YPK_2170  binding-protein-dependent transport systems inner membrane component  25.45 
 
 
278 aa  83.2  0.000000000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.260813  n/a   
 
 
-
 
NC_011769  DvMF_2349  binding-protein-dependent transport systems inner membrane component  41.4 
 
 
281 aa  83.2  0.000000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.939566 
 
 
-
 
NC_009708  YpsIP31758_2058  putative spermidine/putrescine ABC transporter, permease protein  25.45 
 
 
278 aa  83.2  0.000000000000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.650732  n/a   
 
 
-
 
NC_012880  Dd703_1788  binding-protein-dependent transport systems inner membrane component  29.51 
 
 
275 aa  83.2  0.000000000000004  Dickeya dadantii Ech703  Bacteria  normal  0.0709875  n/a   
 
 
-
 
NC_009668  Oant_3714  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
264 aa  82.8  0.000000000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.50413  n/a   
 
 
-
 
NC_010159  YpAngola_A2450  putative spermidine/putrescine ABC transporter permease  25.45 
 
 
278 aa  83.2  0.000000000000005  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4417  binding-protein-dependent transport systems inner membrane component  27.59 
 
 
268 aa  82.8  0.000000000000005  Polaromonas sp. JS666  Bacteria  normal  0.303148  normal 
 
 
-
 
NC_013131  Caci_4221  binding-protein-dependent transport systems inner membrane component  35.47 
 
 
291 aa  82.8  0.000000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.174626  normal  0.39813 
 
 
-
 
NC_011368  Rleg2_5591  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
266 aa  82.8  0.000000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1549  ornithine carbamoyltransferase  27.13 
 
 
284 aa  82.8  0.000000000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.899373  normal 
 
 
-
 
NC_009051  Memar_1886  NifC-like ABC-type porter  27.31 
 
 
265 aa  82.8  0.000000000000005  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  29.79 
 
 
275 aa  82.8  0.000000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  31.64 
 
 
264 aa  82.8  0.000000000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_013223  Dret_1820  NifC-like ABC-type porter  33.51 
 
 
261 aa  82.4  0.000000000000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0980695  normal 
 
 
-
 
NC_009504  BOV_A0303  spermidine/putrescine ABC transporter, permease protein  36.5 
 
 
242 aa  82.4  0.000000000000007  Brucella ovis ATCC 25840  Bacteria  normal  0.102873  n/a   
 
 
-
 
NC_007005  Psyr_2399  binding-protein dependent transport system inner membrane protein  30.11 
 
 
271 aa  82.4  0.000000000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00651767  normal  0.388943 
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  31.36 
 
 
264 aa  82.4  0.000000000000007  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_004311  BRA0329  spermidine/putrescine ABC transporter, permease protein  36.5 
 
 
258 aa  82.4  0.000000000000008  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011982  Avi_8304  ABC transporter  28.8 
 
 
265 aa  82.4  0.000000000000008  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
264 aa  82.4  0.000000000000008  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  30.06 
 
 
264 aa  82  0.000000000000009  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_011004  Rpal_5130  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
596 aa  82  0.000000000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1953  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
268 aa  82  0.000000000000009  Pseudomonas putida F1  Bacteria  normal  0.911704  normal 
 
 
-
 
NC_009486  Tpet_1536  binding-protein-dependent transport systems inner membrane component  29.7 
 
 
265 aa  82  0.000000000000009  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.00509999  n/a   
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
269 aa  81.3  0.00000000000001  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
NC_004578  PSPTO_2665  spermidine/putrescine ABC transporter, permease protein, putative  29.26 
 
 
271 aa  81.6  0.00000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0357719  n/a   
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
268 aa  81.3  0.00000000000001  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_010483  TRQ2_1585  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
265 aa  81.6  0.00000000000001  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
272 aa  81.6  0.00000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
272 aa  81.6  0.00000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_013923  Nmag_3854  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
273 aa  80.9  0.00000000000002  Natrialba magadii ATCC 43099  Archaea  normal  0.181021  n/a   
 
 
-
 
NC_010501  PputW619_1933  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
269 aa  81.3  0.00000000000002  Pseudomonas putida W619  Bacteria  normal  normal  0.0161656 
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
263 aa  80.9  0.00000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  28.96 
 
 
278 aa  80.9  0.00000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1532  polyamine transport protein PotC  32.42 
 
 
256 aa  81.3  0.00000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
316 aa  80.9  0.00000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013923  Nmag_3864  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
279 aa  81.3  0.00000000000002  Natrialba magadii ATCC 43099  Archaea  normal  0.623194  n/a   
 
 
-
 
NC_008463  PA14_17620  polyamine transport protein PotC  32.42 
 
 
256 aa  81.3  0.00000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2406  binding-protein-dependent transport systems inner membrane component  36.96 
 
 
276 aa  81.3  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00000118681  n/a   
 
 
-
 
NC_008786  Veis_2367  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
597 aa  80.1  0.00000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA1105  polyamine ABC transporter, permease protein  28.83 
 
 
267 aa  80.1  0.00000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3236  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
262 aa  79.7  0.00000000000004  Jannaschia sp. CCS1  Bacteria  normal  0.0387101  normal  0.554966 
 
 
-
 
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