| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2665 |
|---|
| Symbol | |
|---|
| ID | 1184317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2961732 |
|---|
| End bp | 2962547 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394033 |
|---|
| Product | spermidine/putrescine ABC transporter, permease protein, putative |
|---|
| Protein accession | NP_792472 |
|---|
| Protein GI | 28869853 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0357719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCTGA CGCCCAATGC CATGAGCCCT GGTCTGCGCA CGGGTCTGTA CCTGACCACC
GCGCTGATCG CGCTGTTTCT GTTGCTGCCG ATCCTGTTCA TCATCCTGTT GTCGTTCGGT
TCCTCGCAGT GGCTGGTGTT TCCGCCGCCC GGCTGGACGC TGAAGTGGTA TCAGCAGTTT
TTCTCAAACC CTGACTGGAT GGCCGCCGCC ATGTCCAGTT TCAAGGTGGC GATTCTGACC
ACCATCGCGT CGGTGGCGCT CGGCCTGCCG ACCGCGTTCG CACTGGTACG CGGCCGCTTT
CCGGGACGCG ACATCCTGTA CGGCGTGTTT ACGTTGCCGA TGATCGTGCC GCTGGTGATC
ATCGCCGTGG CGGTCTACGC GCTGTTTCTC AAGCTGGGCT ATACCGGGAC GCTGTTTTCC
TTTGTGGTCA GCCATGTGAT CGTCGCCTTG CCGTTCACCA TCATCTCGAT TATCAATTCG
CTGAAGCTGT TCGATCAGTC CATTGAAGAC GCTGCGGTGA TCTGCGGCGC GTCACGCTTG
CAGGCGATCT ACAAGGTGAC CTTCCCCGGC ATCCGTCCGG GCATGATGGC CGGCGCGCTG
TTCGCGTTTC TCGTGTCGTG GGATGAGGTG GTGCTGAGCG TGATGATGGC CAGCCCGACC
CTGCAGACCC TGCCTGTCAA GATGTGGACC ACCCTGCGTC AGGACCTGAC CCCGGTCATC
GCTGTCGCCT CAACGTTGCT GATCGCCCTG TCGGTGCTGA TCATGTTCAT CGCCGCGGCC
CTGCGTCGCC GCAACGAAGC CAGGAGTACG TCATGA
|
|---|
| Protein sequence | MLLTPNAMSP GLRTGLYLTT ALIALFLLLP ILFIILLSFG SSQWLVFPPP GWTLKWYQQF
FSNPDWMAAA MSSFKVAILT TIASVALGLP TAFALVRGRF PGRDILYGVF TLPMIVPLVI
IAVAVYALFL KLGYTGTLFS FVVSHVIVAL PFTIISIINS LKLFDQSIED AAVICGASRL
QAIYKVTFPG IRPGMMAGAL FAFLVSWDEV VLSVMMASPT LQTLPVKMWT TLRQDLTPVI
AVASTLLIAL SVLIMFIAAA LRRRNEARST S
|
|---|
| |