More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0524 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007777  Francci3_0524  response regulator receiver protein  100 
 
 		 181 aa  345  2e-94  Frankia sp. CcI3  Bacteria  normal  1  normal  0.305045 
 
 
-
 
NC_009921  Franean1_6106  response regulator receiver protein  64.35 
 
 		 121 aa  152  2.9999999999999998e-36  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.0846818 
 
 
-
 
NC_008578  Acel_0262  response regulator receiver protein  49.57 
 
 		 155 aa  100  1e-20  Acidothermus cellulolyticus 11B  Bacteria  normal  0.62327  normal  1 
 
 
-
 
NC_008699  Noca_4359  ATPase domain-containing protein  42.28 
 
 		 494 aa  92.8  3e-18  Nocardioides sp. JS614  Bacteria  normal  0.191758  n/a   
 
 
-
 
NC_008699  Noca_1262  PAS/PAC sensor hybrid histidine kinase  44.09 
 
 		 655 aa  87.8  8e-17  Nocardioides sp. JS614  Bacteria  normal  0.748554  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  40.5 
 
 		 232 aa  85.1  4e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  39.66 
 
 		 217 aa  84.3  8e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  41.53 
 
 		 217 aa  84  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal  1 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  38.02 
 
 		 217 aa  82.8  0.000000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  43.22 
 
 		 213 aa  82.8  0.000000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  40.35 
 
 		 215 aa  82.4  0.000000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  37.4 
 
 		 215 aa  81.6  0.000000000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  39.47 
 
 		 222 aa  80.9  0.000000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_009012  Cthe_2821  response regulator receiver modulated CheB methylesterase  40 
 
 		 364 aa  80.9  0.000000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.148608  n/a   
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  46.15 
 
 		 221 aa  80.1  0.00000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  38.6 
 
 		 216 aa  80.1  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  42.97 
 
 		 228 aa  79.7  0.00000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  42.16 
 
 		 219 aa  80.1  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  38.6 
 
 		 223 aa  79.7  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  35.96 
 
 		 213 aa  79.3  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  34.78 
 
 		 216 aa  79.3  0.00000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_3481  sporulation transcriptional activator Spo0A  34.75 
 
 		 272 aa  79.3  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0151287  n/a   
 
 
-
 
NC_011830  Dhaf_3021  sporulation transcriptional activator Spo0A  36.13 
 
 		 264 aa  79  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000341276  n/a   
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  37.1 
 
 		 212 aa  79  0.00000000000004  Caulobacter sp. K31  Bacteria  normal  1  normal  0.881689 
 
 
-
 
NC_011772  BCG9842_B2026  Two-component protein Kinase  35.1 
 
 		 595 aa  79  0.00000000000004  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  39.83 
 
 		 209 aa  79  0.00000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_2409  two component transcriptional regulator, LuxR family  44.12 
 
 		 221 aa  78.6  0.00000000000004  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000055116  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  38.6 
 
 		 215 aa  78.2  0.00000000000005  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_0080  two component LuxR family transcriptional regulator  33.9 
 
 		 212 aa  78.6  0.00000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  39.47 
 
 		 215 aa  78.6  0.00000000000005  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  37.29 
 
 		 224 aa  78.2  0.00000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  36.8 
 
 		 216 aa  78.2  0.00000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  37.72 
 
 		 215 aa  78.2  0.00000000000006  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_0588  two component transcriptional regulator, LuxR family  38.4 
 
 		 204 aa  78.2  0.00000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal  1 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  37.6 
 
 		 216 aa  78.2  0.00000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal  1 
 
 
-
 
NC_011725  BCB4264_A3228  Two-component protein Kinase  34.44 
 
 		 595 aa  78.2  0.00000000000006  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2996  two component LuxR family transcriptional regulator  34.44 
 
 		 595 aa  77.4  0.00000000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.896317  n/a   
 
 
-
 
NC_013216  Dtox_3754  two component transcriptional regulator, LuxR family  35.65 
 
 		 216 aa  77.8  0.00000000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00290124  normal  1 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  43.97 
 
 		 250 aa  77.8  0.00000000000009  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  38.02 
 
 		 214 aa  77.4  0.00000000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_010001  Cphy_0851  two component LuxR family transcriptional regulator  32.28 
 
 		 216 aa  77.8  0.00000000000009  Clostridium phytofermentans ISDg  Bacteria  normal  0.0778308  n/a   
 
 
-
 
NC_011898  Ccel_1794  response regulator receiver protein  35.24 
 
 		 123 aa  77.8  0.00000000000009  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  33.9 
 
 		 224 aa  77  0.0000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  33.9 
 
 		 224 aa  77  0.0000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_0782  two component transcriptional regulator, LuxR family  42.16 
 
 		 220 aa  77.4  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003909  BCE_3291  response regulator receiver domain-containing protein  34.44 
 
 		 592 aa  77.4  0.0000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  39.47 
 
 		 215 aa  77.4  0.0000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  39.47 
 
 		 215 aa  77.4  0.0000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  39.47 
 
 		 215 aa  77.4  0.0000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  39.32 
 
 		 211 aa  77.4  0.0000000000001  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  39.47 
 
 		 215 aa  77.4  0.0000000000001  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  39.47 
 
 		 215 aa  77.4  0.0000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010003  Pmob_1392  response regulator receiver protein  30.77 
 
 		 119 aa  77.4  0.0000000000001  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  39.47 
 
 		 215 aa  77.4  0.0000000000001  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_013739  Cwoe_3611  response regulator receiver protein  39.67 
 
 		 191 aa  77  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.194602  normal  0.24428 
 
 
-
 
NC_010184  BcerKBAB4_0919  two component LuxR family transcriptional regulator  36.54 
 
 		 214 aa  77  0.0000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_1102  LuxR family DNA-binding response regulator  37.25 
 
 		 214 aa  76.3  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_1722  response regulator receiver protein  33.62 
 
 		 123 aa  76.6  0.0000000000002  Methanococcus maripaludis C6  Archaea  normal  0.298096  n/a   
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  36.89 
 
 		 209 aa  76.6  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal  1 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  40.16 
 
 		 209 aa  76.6  0.0000000000002  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.9 
 
 		 224 aa  76.6  0.0000000000002  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_009637  MmarC7_0180  response regulator receiver protein  32.76 
 
 		 123 aa  75.9  0.0000000000003  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  33.33 
 
 		 218 aa  75.5  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  41.35 
 
 		 215 aa  75.5  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  33.9 
 
 		 224 aa  75.9  0.0000000000003  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  36.36 
 
 		 213 aa  75.9  0.0000000000003  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  36.36 
 
 		 213 aa  75.9  0.0000000000003  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.000000185138 
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  42.72 
 
 		 217 aa  75.5  0.0000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal  1 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  44.12 
 
 		 224 aa  75.5  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal  1 
 
 
-
 
NC_009674  Bcer98_1342  response regulator receiver protein  32.77 
 
 		 144 aa  75.5  0.0000000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0271909  n/a   
 
 
-
 
NC_013947  Snas_0541  two component transcriptional regulator, LuxR family  37.7 
 
 		 221 aa  75.1  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal  1 
 
 
-
 
NC_006274  BCZK3023  response regulator  34.21 
 
 		 597 aa  75.1  0.0000000000006  Bacillus cereus E33L  Bacteria  decreased coverage  0.000011368  n/a   
 
 
-
 
NC_007644  Moth_1505  response regulator receiver protein  34.43 
 
 		 256 aa  74.7  0.0000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_1239  two component LuxR family transcriptional regulator  37.62 
 
 		 196 aa  74.7  0.0000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.0482404  normal  0.916816 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  40.87 
 
 		 213 aa  75.1  0.0000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_009253  Dred_1086  response regulator receiver protein  34.45 
 
 		 256 aa  74.7  0.0000000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  35.34 
 
 		 216 aa  74.7  0.0000000000006  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  40.68 
 
 		 230 aa  74.3  0.0000000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_1689  response regulator receiver protein  31.09 
 
 		 280 aa  74.3  0.0000000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  hitchhiker  0.00144029 
 
 
-
 
NC_009135  MmarC5_0740  response regulator receiver protein  32.76 
 
 		 123 aa  74.3  0.0000000000009  Methanococcus maripaludis C5  Archaea  normal  0.748178  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  43.7 
 
 		 229 aa  74.3  0.0000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009634  Mevan_0256  response regulator receiver protein  32.76 
 
 		 123 aa  73.6  0.000000000001  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  37.5 
 
 		 211 aa  73.9  0.000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_0613  response regulator receiver protein  35.04 
 
 		 136 aa  73.6  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_009616  Tmel_0931  response regulator receiver protein  28.21 
 
 		 120 aa  73.6  0.000000000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.252152  n/a   
 
 
-
 
NC_013385  Adeg_1392  sporulation transcriptional activator Spo0A  33.33 
 
 		 257 aa  73.6  0.000000000001  Ammonifex degensii KC4  Bacteria  normal  0.664762  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  39.18 
 
 		 213 aa  73.9  0.000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  35.34 
 
 		 213 aa  73.9  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  39.84 
 
 		 250 aa  73.6  0.000000000001  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  35.54 
 
 		 218 aa  73.6  0.000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  35.54 
 
 		 218 aa  73.6  0.000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_008740  Maqu_1191  two component LuxR family transcriptional regulator  36.59 
 
 		 219 aa  73.9  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.259161  n/a   
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  36.23 
 
 		 244 aa  73.6  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  43.4 
 
 		 209 aa  73.9  0.000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  36.8 
 
 		 213 aa  73.6  0.000000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal  1 
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  36.44 
 
 		 213 aa  73.2  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_007413  Ava_3166  response regulator receiver domain-containing protein  33.62 
 
 		 136 aa  72.8  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.0764134 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  41.18 
 
 		 226 aa  72.8  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal  1 
 
 
-
 
NC_008009  Acid345_3748  two component LuxR family transcriptional regulator  36.67 
 
 		 211 aa  72.8  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.107866  normal  1 
 
 
-
 
NC_009483  Gura_2688  response regulator receiver modulated CheB methylesterase  40.54 
 
 		 350 aa  73.2  0.000000000002  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000112566  n/a   
 
 
-
 
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