More than 300 homologs were found in PanDaTox collection
for query gene Cpin_1645 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_1645  carbamoyl phosphate synthase small subunit  100 
 
 
369 aa  768    Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0705  carbamoyl phosphate synthase small subunit  62.88 
 
 
370 aa  501  1e-141  Pedobacter heparinus DSM 2366  Bacteria  normal  0.274558  normal 
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  62.71 
 
 
365 aa  489  1e-137  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_013730  Slin_5758  carbamoyl-phosphate synthase, small subunit  61.5 
 
 
367 aa  467  9.999999999999999e-131  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4372  carbamoyl phosphate synthase small subunit  57.78 
 
 
368 aa  457  1e-127  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_05860  carbamoyl-phosphate synthase small subunit  56.39 
 
 
373 aa  454  1.0000000000000001e-126  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.261865  n/a   
 
 
-
 
NC_009441  Fjoh_0369  carbamoyl phosphate synthase small subunit  55.99 
 
 
372 aa  444  1e-123  Flavobacterium johnsoniae UW101  Bacteria  normal  0.528508  n/a   
 
 
-
 
NC_013162  Coch_0275  carbamoyl phosphate synthase small subunit  55.15 
 
 
366 aa  442  1e-123  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.000180913  n/a   
 
 
-
 
NC_013501  Rmar_2002  carbamoyl-phosphate synthase, small subunit  49.72 
 
 
379 aa  370  1e-101  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  47.17 
 
 
391 aa  353  2e-96  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  46.41 
 
 
371 aa  347  1e-94  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  46.41 
 
 
366 aa  348  1e-94  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  47.38 
 
 
369 aa  346  3e-94  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  46.63 
 
 
377 aa  345  6e-94  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  47.24 
 
 
369 aa  344  1e-93  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  46.94 
 
 
369 aa  345  1e-93  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  46.11 
 
 
380 aa  344  2e-93  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  46.11 
 
 
380 aa  344  2e-93  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  46.54 
 
 
384 aa  343  4e-93  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  45.6 
 
 
392 aa  342  9e-93  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  44 
 
 
376 aa  341  1e-92  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  45.99 
 
 
389 aa  341  1e-92  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  45.6 
 
 
392 aa  341  1e-92  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  45.43 
 
 
379 aa  341  1e-92  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  46.09 
 
 
386 aa  341  1e-92  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  44.89 
 
 
386 aa  337  1.9999999999999998e-91  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  44.26 
 
 
367 aa  335  1e-90  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  46.47 
 
 
385 aa  333  4e-90  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  45.58 
 
 
373 aa  332  6e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  46.26 
 
 
376 aa  331  2e-89  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  43.99 
 
 
367 aa  329  6e-89  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0435  carbamoyl phosphate synthase small subunit  43.47 
 
 
392 aa  328  7e-89  Sphingomonas wittichii RW1  Bacteria  normal  0.29183  normal 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  43.83 
 
 
388 aa  327  3e-88  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  44.89 
 
 
379 aa  327  3e-88  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  42.63 
 
 
381 aa  326  3e-88  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  46.51 
 
 
374 aa  326  4.0000000000000003e-88  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  44.82 
 
 
359 aa  325  7e-88  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  45.12 
 
 
382 aa  323  2e-87  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  44.74 
 
 
374 aa  322  5e-87  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  44.74 
 
 
374 aa  322  5e-87  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  43.65 
 
 
376 aa  322  8e-87  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  44.2 
 
 
391 aa  322  8e-87  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  43.32 
 
 
397 aa  322  9.000000000000001e-87  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  44.3 
 
 
381 aa  321  9.999999999999999e-87  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1307  carbamoyl phosphate synthase small subunit  44.85 
 
 
398 aa  321  9.999999999999999e-87  Synechococcus sp. CC9902  Bacteria  normal  0.786161  n/a   
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  43.88 
 
 
382 aa  321  9.999999999999999e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  43.87 
 
 
373 aa  321  9.999999999999999e-87  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  43.97 
 
 
372 aa  321  1.9999999999999998e-86  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  42.18 
 
 
393 aa  319  3.9999999999999996e-86  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  44.44 
 
 
359 aa  319  3.9999999999999996e-86  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  44.69 
 
 
359 aa  319  5e-86  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  44.68 
 
 
380 aa  319  5e-86  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  44.84 
 
 
372 aa  319  6e-86  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  44.74 
 
 
374 aa  318  7.999999999999999e-86  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_013421  Pecwa_3841  carbamoyl phosphate synthase small subunit  43.88 
 
 
382 aa  318  9e-86  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0784  carbamoyl phosphate synthase small subunit  44.03 
 
 
391 aa  318  1e-85  Yersinia pestis Angola  Bacteria  normal  0.594963  normal  0.491126 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  43.96 
 
 
372 aa  318  1e-85  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  43.66 
 
 
361 aa  318  1e-85  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  44.14 
 
 
397 aa  318  1e-85  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  43.88 
 
 
391 aa  318  1e-85  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3583  carbamoyl phosphate synthase small subunit  44.03 
 
 
391 aa  317  2e-85  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  43.94 
 
 
374 aa  317  2e-85  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  43.88 
 
 
382 aa  317  2e-85  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_009708  YpsIP31758_3454  carbamoyl phosphate synthase small subunit  44.03 
 
 
391 aa  317  2e-85  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  43.04 
 
 
405 aa  316  3e-85  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  41.97 
 
 
402 aa  316  4e-85  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  43.62 
 
 
382 aa  316  4e-85  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  42.25 
 
 
386 aa  316  4e-85  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  44.41 
 
 
380 aa  316  5e-85  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  44.63 
 
 
356 aa  315  5e-85  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  41.58 
 
 
389 aa  315  6e-85  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  44.77 
 
 
373 aa  315  6e-85  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  44.3 
 
 
381 aa  315  8e-85  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  42.44 
 
 
392 aa  315  8e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  42.28 
 
 
383 aa  315  9e-85  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  45.03 
 
 
377 aa  315  9e-85  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  42.97 
 
 
382 aa  315  9.999999999999999e-85  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  313  1.9999999999999998e-84  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  42.93 
 
 
389 aa  314  1.9999999999999998e-84  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  313  2.9999999999999996e-84  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  43.82 
 
 
390 aa  313  3.9999999999999997e-84  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  313  3.9999999999999997e-84  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  43.43 
 
 
379 aa  313  3.9999999999999997e-84  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  43.35 
 
 
382 aa  312  4.999999999999999e-84  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  44.15 
 
 
381 aa  312  4.999999999999999e-84  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  43.62 
 
 
373 aa  312  4.999999999999999e-84  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  44.15 
 
 
381 aa  312  5.999999999999999e-84  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  43.09 
 
 
388 aa  312  5.999999999999999e-84  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  43.47 
 
 
385 aa  311  7.999999999999999e-84  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  42.23 
 
 
416 aa  311  1e-83  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  42.9 
 
 
390 aa  311  1e-83  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  43.14 
 
 
358 aa  311  1e-83  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  43.09 
 
 
391 aa  311  1e-83  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  40.58 
 
 
414 aa  310  2e-83  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
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