More than 300 homologs were found in PanDaTox collection
for query gene CHU_2152 on replicon NC_008255
Organism: Cytophaga hutchinsonii ATCC 33406



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008255  CHU_2152  two-component response regulator  100 
 
 
225 aa  456  1e-127  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.138022  normal 
 
 
-
 
NC_013132  Cpin_4933  two component transcriptional regulator, winged helix family  35.59 
 
 
224 aa  144  9e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.742602  normal 
 
 
-
 
NC_013132  Cpin_4882  two component transcriptional regulator, winged helix family  33.63 
 
 
224 aa  137  1e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3534  two-component system response regulator  32.89 
 
 
225 aa  135  5e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.524315 
 
 
-
 
NC_013730  Slin_0465  two component transcriptional regulator, winged helix family  33.03 
 
 
225 aa  132  3.9999999999999996e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2540  response regulator receiver  32.33 
 
 
231 aa  130  1.0000000000000001e-29  Pedobacter heparinus DSM 2366  Bacteria  normal  0.255276  normal 
 
 
-
 
NC_013162  Coch_1449  two component transcriptional regulator, winged helix family  34.51 
 
 
223 aa  130  2.0000000000000002e-29  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0720  DNA-binding response regulator  33.04 
 
 
229 aa  125  5e-28  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.503154 
 
 
-
 
NC_013132  Cpin_5580  two component transcriptional regulator, winged helix family  38.36 
 
 
231 aa  124  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.85465 
 
 
-
 
NC_013732  Slin_6964  two component transcriptional regulator, winged helix family  32.29 
 
 
226 aa  119  4.9999999999999996e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.043471  normal  0.107802 
 
 
-
 
NC_013061  Phep_1332  response regulator receiver  31.82 
 
 
224 aa  117  9.999999999999999e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013731  Slin_6736  two component transcriptional regulator, winged helix family  30.94 
 
 
226 aa  117  9.999999999999999e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.973659  normal  0.523736 
 
 
-
 
NC_013132  Cpin_2586  two component transcriptional regulator, winged helix family  30 
 
 
227 aa  114  8.999999999999998e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0130561 
 
 
-
 
NC_013037  Dfer_3158  two component transcriptional regulator, winged helix family  30.63 
 
 
225 aa  114  8.999999999999998e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4553  two component transcriptional regulator, winged helix family  32.74 
 
 
227 aa  110  2.0000000000000002e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.130056  normal 
 
 
-
 
NC_008255  CHU_2732  two component transcriptional regulator  29.78 
 
 
225 aa  110  2.0000000000000002e-23  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3049  two component transcriptional regulator  32.27 
 
 
224 aa  105  4e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1185  response regulator receiver  32.28 
 
 
225 aa  103  2e-21  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0210  DNA-binding response regulator  31.56 
 
 
225 aa  102  7e-21  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0525  transcriptional regulatory protein  31.11 
 
 
233 aa  100  2e-20  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.369528  normal  0.420949 
 
 
-
 
NC_007964  Nham_3371  two component transcriptional regulator  31.11 
 
 
233 aa  99.8  3e-20  Nitrobacter hamburgensis X14  Bacteria  normal  0.442318  n/a   
 
 
-
 
NC_009485  BBta_6533  cell cycle transcriptional regulator CtrA  31.11 
 
 
233 aa  99.4  4e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.1191  normal 
 
 
-
 
NC_011369  Rleg2_3079  two component transcriptional regulator, winged helix family  30.67 
 
 
233 aa  99  5e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.457382 
 
 
-
 
NC_012850  Rleg_3336  two component transcriptional regulator, winged helix family  30.67 
 
 
233 aa  99  5e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.523001 
 
 
-
 
NC_009636  Smed_2605  two component transcriptional regulator  30.67 
 
 
233 aa  99  5e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2213  two component transcriptional regulator / cell cycle transcriptional regulator CtrA  30.67 
 
 
249 aa  99  5e-20  Chelativorans sp. BNC1  Bacteria  normal  0.88155  n/a   
 
 
-
 
NC_008044  TM1040_1399  two component transcriptional regulator  32.74 
 
 
239 aa  98.6  6e-20  Ruegeria sp. TM1040  Bacteria  normal  normal  0.365128 
 
 
-
 
NC_009667  Oant_1569  two component transcriptional regulator  30.67 
 
 
232 aa  98.6  7e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1542  cell cycle transcriptional regulator CtrA  30.67 
 
 
232 aa  98.2  8e-20  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_004310  BR1599  cell cycle transcriptional regulator CtrA  30.67 
 
 
232 aa  98.2  8e-20  Brucella suis 1330  Bacteria  normal  0.0123641  n/a   
 
 
-
 
NC_007778  RPB_3912  two component transcriptional regulator  30.67 
 
 
233 aa  98.2  8e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4548  multi-component transcriptional regulator, winged helix family  35.11 
 
 
614 aa  98.6  8e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007958  RPD_3672  winged helix family two component transcriptional regulator  30.67 
 
 
233 aa  98.2  8e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1822  two component transcriptional regulator, winged helix family  30.67 
 
 
233 aa  98.2  9e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.077619  n/a   
 
 
-
 
NC_011661  Dtur_0537  two component transcriptional regulator, winged helix family  34.36 
 
 
224 aa  97.8  1e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0716782  n/a   
 
 
-
 
NC_007925  RPC_4233  two component transcriptional regulator  30.67 
 
 
233 aa  98.2  1e-19  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0736222  normal 
 
 
-
 
NC_011989  Avi_3527  two component response regulator  30.67 
 
 
233 aa  97.8  1e-19  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1026  two component transcriptional regulator  28.7 
 
 
224 aa  97.4  2e-19  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000442073 
 
 
-
 
NC_011146  Gbem_0243  two component transcriptional regulator, winged helix family  27.68 
 
 
224 aa  97.1  2e-19  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000226454  n/a   
 
 
-
 
NC_009486  Tpet_0521  two component transcriptional regulator  27.27 
 
 
223 aa  96.7  2e-19  Thermotoga petrophila RKU-1  Bacteria  normal  0.720367  n/a   
 
 
-
 
NC_014148  Plim_0003  response regulator receiver  30.04 
 
 
235 aa  96.3  3e-19  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2454  transcriptional regulator domain protein  28.25 
 
 
224 aa  95.9  4e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  0.02572  normal  0.811367 
 
 
-
 
NC_008783  BARBAKC583_1019  cell cycle transcriptional regulator CtrA  29.6 
 
 
233 aa  96.3  4e-19  Bartonella bacilliformis KC583  Bacteria  normal  0.736916  n/a   
 
 
-
 
NC_010510  Mrad2831_6127  two component transcriptional regulator  30.67 
 
 
233 aa  95.5  5e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0784  two component transcriptional regulator, winged helix family  30.67 
 
 
233 aa  95.1  7e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.182528 
 
 
-
 
NC_010172  Mext_0824  response regulator receiver  30.67 
 
 
233 aa  95.1  7e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.788002  normal  0.224481 
 
 
-
 
NC_013522  Taci_0717  two component transcriptional regulator, winged helix family  27.48 
 
 
226 aa  95.1  7e-19  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000154116  n/a   
 
 
-
 
NC_010338  Caul_1026  two component transcriptional regulator  29.15 
 
 
231 aa  95.1  8e-19  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0227  two component transcriptional regulator, winged helix family  27.23 
 
 
224 aa  95.1  8e-19  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_1445  two component transcriptional regulator, winged helix family  29.78 
 
 
225 aa  94.4  1e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2815  response regulator receiver:transcriptional regulatory protein, C-terminal  30.67 
 
 
218 aa  94.7  1e-18  Dechloromonas aromatica RCB  Bacteria  normal  0.877458  normal 
 
 
-
 
NC_010505  Mrad2831_5573  two component transcriptional regulator  30.22 
 
 
233 aa  94.7  1e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.30933  normal 
 
 
-
 
NC_011729  PCC7424_2752  multi-component transcriptional regulator, winged helix family  29.26 
 
 
799 aa  94.4  1e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_3488  two component transcriptional regulator  30.22 
 
 
233 aa  94.4  1e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  0.487721  normal  0.120653 
 
 
-
 
NC_008347  Mmar10_0669  transcription regulator CtrA  29.15 
 
 
231 aa  94.4  1e-18  Maricaulis maris MCS10  Bacteria  normal  0.7626  normal 
 
 
-
 
NC_010581  Bind_0344  two component transcriptional regulator  30.22 
 
 
233 aa  94.4  1e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.348132 
 
 
-
 
NC_009512  Pput_2735  two component transcriptional regulator  33.04 
 
 
219 aa  94.4  1e-18  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1416  two component transcriptional regulator, winged helix family  29.78 
 
 
225 aa  94.4  1e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_1287  two component transcriptional regulator  30.63 
 
 
221 aa  94.4  1e-18  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.00449543  n/a   
 
 
-
 
NC_008740  Maqu_3217  two component transcriptional regulator  30.63 
 
 
221 aa  94  2e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.164246  n/a   
 
 
-
 
NC_009049  Rsph17029_1279  two component transcriptional regulator  32.8 
 
 
237 aa  93.6  2e-18  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.461363  normal  0.257738 
 
 
-
 
NC_010511  M446_3946  two component transcriptional regulator  30.22 
 
 
233 aa  94  2e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.26309  normal  0.0241191 
 
 
-
 
NC_010725  Mpop_0747  two component transcriptional regulator, winged helix family  30.22 
 
 
233 aa  94  2e-18  Methylobacterium populi BJ001  Bacteria  normal  0.485257  normal  0.934966 
 
 
-
 
NC_011894  Mnod_0057  two component transcriptional regulator, winged helix family  27.35 
 
 
225 aa  94  2e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2621  two component transcriptional regulator  32.8 
 
 
237 aa  93.6  2e-18  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.75303  n/a   
 
 
-
 
NC_013203  Apar_0090  two component transcriptional regulator, winged helix family  32.74 
 
 
226 aa  93.6  2e-18  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3622  two component transcriptional regulator, winged helix family  30.22 
 
 
233 aa  94  2e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0114155  n/a   
 
 
-
 
NC_009428  Rsph17025_1903  two component transcriptional regulator  32.8 
 
 
237 aa  93.6  2e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1620  two component transcriptional regulator  27.62 
 
 
228 aa  94  2e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2529  two component transcriptional regulator, winged helix family  30.22 
 
 
233 aa  93.6  2e-18  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013171  Apre_0086  two component transcriptional regulator, winged helix family  28.63 
 
 
223 aa  93.2  3e-18  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.00000430601  n/a   
 
 
-
 
NC_003909  BCE_5227  DNA-binding response regulator  30.52 
 
 
225 aa  93.2  3e-18  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3958  two component transcriptional regulator  28.38 
 
 
237 aa  92.8  4e-18  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3444  two component transcriptional regulator  30.67 
 
 
220 aa  92.8  4e-18  Sphingomonas wittichii RW1  Bacteria  normal  0.112849  normal  0.384843 
 
 
-
 
NC_011729  PCC7424_4628  two component transcriptional regulator, winged helix family  28.76 
 
 
224 aa  92.8  4e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.000289587 
 
 
-
 
NC_007413  Ava_4085  two component transcriptional regulator  29.65 
 
 
225 aa  92.4  5e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.320847 
 
 
-
 
NC_010001  Cphy_0196  two component transcriptional regulator  29.73 
 
 
226 aa  92.4  5e-18  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2941  multi-component transcriptional regulator, winged helix family  28.89 
 
 
652 aa  92  6e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1508  cell cycle transcriptional regulator ctrA  33.33 
 
 
237 aa  92  6e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.469708  normal  0.710734 
 
 
-
 
NC_009719  Plav_2174  two component transcriptional regulator  29.6 
 
 
235 aa  92  7e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.77199  normal 
 
 
-
 
NC_011725  BCB4264_A5235  DNA-binding response regulator  30.66 
 
 
220 aa  91.7  7e-18  Bacillus cereus B4264  Bacteria  decreased coverage  0.0048741  n/a   
 
 
-
 
NC_013204  Elen_1170  two component transcriptional regulator, winged helix family  33.67 
 
 
220 aa  91.7  8e-18  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.454571 
 
 
-
 
NC_010483  TRQ2_0535  two component transcriptional regulator  27.27 
 
 
223 aa  91.3  1e-17  Thermotoga sp. RQ2  Bacteria  normal  0.660155  n/a   
 
 
-
 
NC_011773  BCAH820_3235  DNA-binding response regulator  28.83 
 
 
224 aa  90.9  1e-17  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007595  Synpcc7942_B2647  response regulator receiver domain-containing protein  30.62 
 
 
224 aa  91.3  1e-17  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.629356 
 
 
-
 
NC_011898  Ccel_1546  two component transcriptional regulator, winged helix family  31.44 
 
 
237 aa  90.9  1e-17  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000115937  n/a   
 
 
-
 
NC_007802  Jann_2505  two component transcriptional regulator  30.53 
 
 
238 aa  91.3  1e-17  Jannaschia sp. CCS1  Bacteria  normal  0.791438  normal  0.178168 
 
 
-
 
NC_008532  STER_0925  DNA-binding response regulator  33.33 
 
 
219 aa  90.9  1e-17  Streptococcus thermophilus LMD-9  Bacteria  decreased coverage  0.0000502161  n/a   
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  26.58 
 
 
225 aa  90.1  2e-17  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  28.38 
 
 
224 aa  90.5  2e-17  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_010681  Bphyt_1510  two component heavy metal response transcriptional regulator, winged helix family  30.95 
 
 
227 aa  90.9  2e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1255  hypothetical protein  34.78 
 
 
225 aa  90.1  2e-17  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1254  hypothetical protein  34.78 
 
 
225 aa  90.1  2e-17  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_3617  DNA-binding transcriptional regulator BasR  31.75 
 
 
220 aa  90.1  2e-17  Enterobacter sp. 638  Bacteria  hitchhiker  0.0000270917  normal  0.430126 
 
 
-
 
NC_007530  GBAA_3229  DNA-binding response regulator  28.38 
 
 
224 aa  90.5  2e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3511  two component transcriptional regulator  32.14 
 
 
224 aa  90.5  2e-17  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000000699106  n/a   
 
 
-
 
NC_008025  Dgeo_2318  two component transcriptional regulator  35.03 
 
 
225 aa  90.5  2e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.642935  normal 
 
 
-
 
NC_009467  Acry_3106  two component heavy metal response transcriptional regulator  29.15 
 
 
225 aa  90.9  2e-17  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2960  two component heavy metal response transcriptional regulator  30.48 
 
 
227 aa  89.7  3e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0523  two component transcriptional regulator, winged helix family  30.24 
 
 
224 aa  89.7  3e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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