| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5580 |
|---|
| Symbol | |
|---|
| ID | 8361757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7128921 |
|---|
| End bp | 7129616 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644967724 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003125208 |
|---|
| Protein GI | 256424555 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.85465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAC TGATCATTGA TGGCGAGTTG TCTTTATCGC AGGTGATGAT CTCCTATTTA
TCAGCCGAAA ACTATATATG TGAGTATGCC AATACTTACA AAAGAGCACA GTCGAAGATC
GCAGTATATG ACTATGATTG CATTTTACTG GACCTGGACC TGCCCGATGG TGATGGAAGC
AAGCTGCTGG AGGAAATCAA GAAGAGAGAC AAACAGGAAG GCGTTATTAT TATCTCCGCG
AGACAATCGT ATGAAGATAA AATCCACGCT TTACAGAACG GCGCTGACGA TTACATTACT
AAACCGTTTT ATCTGCCGGA ACTGGGCGCC AGGATCTTCT CAGTGATCAG AAGAAGAAAA
TACAATAACT CCAATATTAT CAGACAGGGA GCTTTGACTG TCGACCTGCT CGCAAAAACC
GTCTACATTA ATGAGCTGCC GGTACTGCTT ACGCGCAAGG AATTTGACCT CCTGATTTAT
TTCATCGGCA ATAAAAACAA GGTGCTTTCC AAACAGGAAC TGGCCGAACA ACTTTCCGGC
GATATTGCCG GGCTCCGGGA TGACCATAAT GTCATTTACG CCCATATCAA AAACCTCAAG
AAGAAACTAC AGGAAGGCGG CGCAGGTAAT TACCTGAAAA CAATCTATGC CACCGGGTAC
AAATGGGATT TCTGTACATC AGACCAAACA CATTAA
|
|---|
| Protein sequence | MKILIIDGEL SLSQVMISYL SAENYICEYA NTYKRAQSKI AVYDYDCILL DLDLPDGDGS
KLLEEIKKRD KQEGVIIISA RQSYEDKIHA LQNGADDYIT KPFYLPELGA RIFSVIRRRK
YNNSNIIRQG ALTVDLLAKT VYINELPVLL TRKEFDLLIY FIGNKNKVLS KQELAEQLSG
DIAGLRDDHN VIYAHIKNLK KKLQEGGAGN YLKTIYATGY KWDFCTSDQT H
|
|---|
| |