More than 300 homologs were found in PanDaTox collection
for query gene Arth_1832 on replicon NC_008541
Organism: Arthrobacter sp. FB24



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008541  Arth_1832  LysR family transcriptional regulator  100 
 
 
298 aa  587  1e-167  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2825  LysR family transcriptional regulator  52.13 
 
 
297 aa  263  3e-69  Thermobifida fusca YX  Bacteria  normal  0.0726357  n/a   
 
 
-
 
NC_013947  Snas_1578  transcriptional regulator, LysR family  51.93 
 
 
298 aa  258  8e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.492151  normal 
 
 
-
 
NC_013510  Tcur_3361  transcriptional regulator, LysR family  51.41 
 
 
298 aa  241  7.999999999999999e-63  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0107379  n/a   
 
 
-
 
NC_013131  Caci_1156  transcriptional regulator, LysR family  48.92 
 
 
308 aa  225  9e-58  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3536  transcriptional regulator, LysR family  46.88 
 
 
318 aa  209  4e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.246229  normal  0.724782 
 
 
-
 
NC_014165  Tbis_2423  LysR family transcriptional regulator  47.84 
 
 
316 aa  204  1e-51  Thermobispora bispora DSM 43833  Bacteria  normal  0.537567  normal 
 
 
-
 
NC_013131  Caci_0310  transcriptional regulator, LysR family  44.69 
 
 
287 aa  159  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.76271  normal 
 
 
-
 
NC_010511  M446_0639  LysR family transcriptional regulator  41.24 
 
 
296 aa  149  4e-35  Methylobacterium sp. 4-46  Bacteria  normal  0.87643  normal  0.130782 
 
 
-
 
NC_011138  MADE_01219  putative LysR-family transcriptional regulator  34.3 
 
 
302 aa  139  6e-32  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0949  transcriptional regulator, LysR family  33.21 
 
 
292 aa  120  3e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.634879  normal 
 
 
-
 
NC_012912  Dd1591_1350  transcriptional regulator, LysR family  33.69 
 
 
303 aa  108  2e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6757  transcriptional regulator, LysR family  27.86 
 
 
300 aa  106  4e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.782335  normal 
 
 
-
 
NC_012917  PC1_3381  transcriptional regulator, LysR family  32.13 
 
 
296 aa  104  2e-21  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3502  LysR family transcriptional regulator  32.73 
 
 
310 aa  101  1e-20  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0270  transcriptional regulator, LysR family  29.18 
 
 
298 aa  100  3e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1471  transcriptional regulator, LysR family  27.86 
 
 
307 aa  99.8  5e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0676455 
 
 
-
 
NC_009654  Mmwyl1_3271  LysR family transcriptional regulator  30.88 
 
 
298 aa  94  3e-18  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.0045725 
 
 
-
 
NC_007952  Bxe_B0988  LysR family transcriptional regulator  28.38 
 
 
310 aa  84.3  0.000000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.665564 
 
 
-
 
NC_009831  Ssed_1224  carbonate dehydratase  30.25 
 
 
313 aa  82.8  0.000000000000007  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000421173  normal  0.31799 
 
 
-
 
NC_010506  Swoo_1324  LysR family transcriptional regulator  29.89 
 
 
313 aa  82.4  0.000000000000008  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.230209 
 
 
-
 
NC_003295  RSc0160  transcription regulator protein  30.24 
 
 
308 aa  80.9  0.00000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.603691  normal  0.705877 
 
 
-
 
NC_007954  Sden_2693  LysR, substrate-binding  29.54 
 
 
313 aa  79.3  0.00000000000008  Shewanella denitrificans OS217  Bacteria  normal  0.426832  n/a   
 
 
-
 
NC_012856  Rpic12D_0050  transcriptional regulator, LysR family  29.9 
 
 
307 aa  79.3  0.00000000000008  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1113  LysR family transcriptional regulator  29.54 
 
 
313 aa  78.6  0.0000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.800719  n/a   
 
 
-
 
NC_008700  Sama_2485  LysR family transcriptional regulator  29.75 
 
 
313 aa  79  0.0000000000001  Shewanella amazonensis SB2B  Bacteria  normal  0.434999  normal 
 
 
-
 
NC_011901  Tgr7_0678  transcriptional regulator, LysR family  31.16 
 
 
309 aa  77.8  0.0000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0053  transcriptional regulator, LysR family  28.97 
 
 
307 aa  77.4  0.0000000000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_38270  pca operon transcription factor PcaQ  33.49 
 
 
310 aa  77.4  0.0000000000003  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2291  LysR family transcriptional regulator  36.99 
 
 
320 aa  76.6  0.0000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.11333  normal  0.519031 
 
 
-
 
NC_011891  A2cp1_0372  transcriptional regulator, LysR family  33.68 
 
 
313 aa  76.6  0.0000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.103497  n/a   
 
 
-
 
NC_007778  RPB_4510  LysR family transcriptional regulator  29.59 
 
 
308 aa  75.9  0.0000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.172827  normal  0.41646 
 
 
-
 
NC_007778  RPB_3829  LysR family transcriptional regulator  28.38 
 
 
289 aa  74.3  0.000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.19019  normal 
 
 
-
 
NC_011145  AnaeK_0359  transcriptional regulator, LysR family  33.68 
 
 
313 aa  74.7  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0121795  n/a   
 
 
-
 
NC_008345  Sfri_2868  transcriptional regulator, LysR family protein  28.11 
 
 
313 aa  74.3  0.000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0376307  n/a   
 
 
-
 
NC_009656  PSPA7_0230  transcriptional regulator PcaQ  31.34 
 
 
305 aa  74.3  0.000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1128  LysR family transcriptional regulator  28.72 
 
 
313 aa  73.9  0.000000000003  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4205  LysR family transcriptional regulator  32.37 
 
 
316 aa  73.9  0.000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3363  LysR family transcriptional regulator  28.11 
 
 
312 aa  73.6  0.000000000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_5165  LysR family transcriptional regulator  28.57 
 
 
298 aa  73.6  0.000000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.14822 
 
 
-
 
NC_011663  Sbal223_1330  transcriptional regulator, LysR family  28.11 
 
 
313 aa  73.6  0.000000000004  Shewanella baltica OS223  Bacteria  hitchhiker  0.00626709  hitchhiker  0.000619665 
 
 
-
 
NC_009665  Shew185_3048  LysR family transcriptional regulator  28.11 
 
 
313 aa  73.6  0.000000000004  Shewanella baltica OS185  Bacteria  normal  0.0118588  n/a   
 
 
-
 
NC_008061  Bcen_3700  LysR family transcriptional regulator  30.72 
 
 
306 aa  73.6  0.000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1256  LysR family transcriptional regulator  28.11 
 
 
313 aa  73.6  0.000000000004  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00128178  normal 
 
 
-
 
NC_008543  Bcen2424_4668  LysR family transcriptional regulator  30.72 
 
 
306 aa  73.6  0.000000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  0.35051  normal  0.639352 
 
 
-
 
NC_008577  Shewana3_1186  LysR family transcriptional regulator  28.11 
 
 
313 aa  73.6  0.000000000004  Shewanella sp. ANA-3  Bacteria  normal  0.177283  normal 
 
 
-
 
NC_009997  Sbal195_3191  LysR family transcriptional regulator  28.11 
 
 
313 aa  73.6  0.000000000004  Shewanella baltica OS195  Bacteria  normal  0.0504852  normal  0.2192 
 
 
-
 
NC_007511  Bcep18194_B1155  LysR family transcriptional regulator  29.93 
 
 
304 aa  73.2  0.000000000005  Burkholderia sp. 383  Bacteria  decreased coverage  0.0046037  normal  0.529732 
 
 
-
 
NC_008321  Shewmr4_1185  LysR family transcriptional regulator  27.76 
 
 
313 aa  72.8  0.000000000008  Shewanella sp. MR-4  Bacteria  normal  0.0305189  normal 
 
 
-
 
NC_010501  PputW619_1262  LysR family transcriptional regulator  34.86 
 
 
310 aa  72.4  0.000000000009  Pseudomonas putida W619  Bacteria  normal  0.0948373  normal  0.0721838 
 
 
-
 
NC_010814  Glov_1976  transcriptional regulator, LysR family  28.28 
 
 
294 aa  72.4  0.000000000009  Geobacter lovleyi SZ  Bacteria  normal  0.59481  n/a   
 
 
-
 
NC_009441  Fjoh_0758  LysR family transcriptional regulator  23.84 
 
 
301 aa  72.4  0.000000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.733983  n/a   
 
 
-
 
NC_002947  PP_1713  LysR family transcriptional regulator  34.29 
 
 
310 aa  72  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0202364 
 
 
-
 
NC_004578  PSPTO_3322  transcriptional regulator, LysR family  28.85 
 
 
296 aa  72  0.00000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0151906  n/a   
 
 
-
 
NC_014210  Ndas_1195  transcriptional regulator, LysR family  36.16 
 
 
339 aa  71.6  0.00000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.279757  normal  0.378839 
 
 
-
 
NC_010505  Mrad2831_0405  LysR family transcriptional regulator  27.97 
 
 
298 aa  71.6  0.00000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3176  LysR family transcriptional regulator  30.36 
 
 
289 aa  72  0.00000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2038  transcriptional regulator, LysR family  26.41 
 
 
305 aa  72  0.00000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.101358  n/a   
 
 
-
 
NC_011366  Rleg2_5938  transcriptional regulator, LysR family  32.14 
 
 
305 aa  72  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.254792 
 
 
-
 
NC_009052  Sbal_3034  LysR family transcriptional regulator  27.76 
 
 
313 aa  72  0.00000000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2178  transcriptional regulator, LysR family  25.6 
 
 
292 aa  70.9  0.00000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0263296  normal 
 
 
-
 
NC_007760  Adeh_0343  LysR family transcriptional regulator  33.33 
 
 
313 aa  71.2  0.00000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.294854  n/a   
 
 
-
 
NC_007794  Saro_2477  LysR family transcriptional regulator  28.34 
 
 
290 aa  70.9  0.00000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0626  LysR family transcriptional regulator  32.16 
 
 
325 aa  71.2  0.00000000002  Polaromonas sp. JS666  Bacteria  normal  0.284859  normal 
 
 
-
 
NC_007948  Bpro_3436  LysR family transcriptional regulator  28.8 
 
 
294 aa  71.2  0.00000000002  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4262  LysR family transcriptional regulator  25.85 
 
 
350 aa  71.2  0.00000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.294051  normal 
 
 
-
 
NC_009438  Sputcn32_2695  LysR family transcriptional regulator  27.5 
 
 
337 aa  70.9  0.00000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.933352  n/a   
 
 
-
 
NC_011988  Avi_5907  transcriptional regulator LysR family  25.63 
 
 
305 aa  71.6  0.00000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1737  LysR family transcriptional regulator  28.26 
 
 
299 aa  70.9  0.00000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0563212 
 
 
-
 
NC_010552  BamMC406_4514  LysR family transcriptional regulator  29.25 
 
 
292 aa  71.2  0.00000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.973008 
 
 
-
 
NC_003295  RSc3334  transcription regulator protein  31.63 
 
 
298 aa  70.5  0.00000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5632  LysR family transcriptional regulator  30.38 
 
 
290 aa  70.9  0.00000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.090076  normal  0.419487 
 
 
-
 
NC_009512  Pput_4006  LysR family transcriptional regulator  34.29 
 
 
310 aa  70.5  0.00000000003  Pseudomonas putida F1  Bacteria  hitchhiker  0.00309329  normal  0.374097 
 
 
-
 
NC_012858  Rleg_7076  transcriptional regulator, LysR family  31.55 
 
 
305 aa  70.1  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62251  normal 
 
 
-
 
NC_008687  Pden_4413  LysR family transcriptional regulator  28.46 
 
 
300 aa  70.1  0.00000000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.163519  normal  0.82352 
 
 
-
 
NC_010511  M446_2650  LysR family transcriptional regulator  29.84 
 
 
283 aa  69.7  0.00000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.221886 
 
 
-
 
NC_012918  GM21_2178  transcriptional regulator, LysR family  25.7 
 
 
305 aa  69.7  0.00000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013457  VEA_000653  transcriptional regulator LysR family  25 
 
 
293 aa  69.7  0.00000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4938  transcriptional regulator, LysR family  29.6 
 
 
283 aa  69.7  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6146  LysR family transcriptional regulator  33.92 
 
 
302 aa  69.7  0.00000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.69148  normal 
 
 
-
 
NC_010322  PputGB1_1305  LysR family transcriptional regulator  33.71 
 
 
310 aa  69.3  0.00000000007  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00000111615  normal  0.494502 
 
 
-
 
NC_007802  Jann_1585  LysR family transcriptional regulator  32.69 
 
 
306 aa  69.3  0.00000000007  Jannaschia sp. CCS1  Bacteria  normal  0.173107  normal 
 
 
-
 
NC_007511  Bcep18194_B1856  LysR family transcriptional regulator  30.7 
 
 
328 aa  69.3  0.00000000008  Burkholderia sp. 383  Bacteria  normal  0.397268  normal  0.189017 
 
 
-
 
NC_009656  PSPA7_4177  transcriptional regulator  25.84 
 
 
304 aa  69.3  0.00000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0160681  n/a   
 
 
-
 
NC_008463  PA14_48770  putative transcriptional regulator  25.83 
 
 
304 aa  68.9  0.00000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.120965  hitchhiker  0.00000153166 
 
 
-
 
NC_009720  Xaut_2757  LysR family transcriptional regulator  28.96 
 
 
292 aa  68.2  0.0000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.486201  normal 
 
 
-
 
NC_011149  SeAg_B2130  transcriptional regulator, LysR family  25.2 
 
 
292 aa  68.9  0.0000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.175681  n/a   
 
 
-
 
NC_010515  Bcenmc03_3375  LysR family transcriptional regulator  32.78 
 
 
314 aa  68.9  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.477325  normal  0.253133 
 
 
-
 
NC_009654  Mmwyl1_4389  LysR family transcriptional regulator  27.27 
 
 
301 aa  68.6  0.0000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0629  putative transcriptional regulator  29.94 
 
 
292 aa  68.6  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.641371  n/a   
 
 
-
 
NC_008463  PA14_06880  LysR family transcriptional regulator  29.94 
 
 
292 aa  68.9  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0196299  normal 
 
 
-
 
NC_009921  Franean1_3382  LysR family transcriptional regulator  28.97 
 
 
316 aa  68.6  0.0000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02855  transcriptional regulator, LysR family protein  29.06 
 
 
322 aa  68.6  0.0000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4731  LysR family transcriptional regulator  29.96 
 
 
307 aa  67.8  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2476  transcriptional regulator, LysR family  30.12 
 
 
295 aa  68.2  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.985162  normal  0.348723 
 
 
-
 
NC_012848  Rleg_4725  transcriptional regulator, LysR family  32.98 
 
 
304 aa  67.8  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.255479  normal 
 
 
-
 
NC_010676  Bphyt_4194  transcriptional regulator, LysR family  29.06 
 
 
302 aa  67.8  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0402435 
 
 
-
 
NC_007974  Rmet_5905  LysR family transcriptional regulator  27.44 
 
 
317 aa  67.8  0.0000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.572512  normal  0.559463 
 
 
-
 
NC_011992  Dtpsy_0613  transcriptional regulator, LysR family  27.34 
 
 
336 aa  67.4  0.0000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.758133  n/a   
 
 
-
 
NC_009511  Swit_0960  LysR family transcriptional regulator  26.05 
 
 
295 aa  67.8  0.0000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.234863  normal 
 
 
-
 
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