| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5907 |
|---|
| Symbol | |
|---|
| ID | 7381000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 916493 |
|---|
| End bp | 917410 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649422 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_002547659 |
|---|
| Protein GI | 222106868 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTGATGAAGC TCATTCAACG CCGCCTGCTG CCGTCCACCA GCGCTCTTGT CACCCTGGAC
TCCGTGGCGA GGCTGGGCAG TTTTTCCGCT GCCGCCAGCG AATTGAACCT GACGCAGGGC
GCGATCAGCC GGCAGATCCA AACGCTTGAA GAGCAATTGG GAACGCAACT GTTCCTGCGC
AATGGTCGCG GCGTGGTCCC GACGCCGCGT GGCGAGAATT TTCACCGCGC CGTCCAGTCC
GCACTGTCTC TGATTCAGGA TGCTTCCCTG GAAGCCATGA CCGGCTCGCA GGGCAACGCC
CTGAACATCG CCATTCTCCC GACCTTTGGG ACACGCTGGC TTTTGCCGCG TATTTCCAGC
TTTGTCGCCG CCCATCCGCA TATCAACCTG AATTTCGCAA CCCGCATCGG CATATTTGAT
TTCGATGCCG AACAATTGGA TGCTGCCATC CATATCGGCA AGCCGAACTG GCCGCGTGCC
ACCTGCACCT TCCTGATGGA CGAGACCGTT GCCCCGGTGT GCAGCCCGGC TTTTCTAGTC
AGCCACCATA TCAAAGCGGA CAGCGATCTG GCCGACCTGC CGCTGATCCA GATGAAGTCG
AGACCGCTGG CCTGGGATCA TTGGTTCGAC AGTCTCGGCA TCACCGCCAC GCCGCGCGCC
GCCATGAGTT TCGAGCAGTT CATGAATGTG GCCCAAGCCT GCATTGCCGG GCTTGGCGTT
GCGCTGATGC CGCTATTTCT GATCGGGCCG GAATTGGAAA GCGGTCAGCT TGTCCTGGCA
TCTCAGCACA GCGTCAACAG CCAGAGCAAT TATTATCTTG TATCACCCGA CAACAGGCCG
CTATCGAAGC CGCTGGCGGC CTTTTCACAA TGGCTGCTCC AAGAAGTAAA GGCATTCACG
ACCAGAGACG CAGGCTAA
|
|---|
| Protein sequence | MMKLIQRRLL PSTSALVTLD SVARLGSFSA AASELNLTQG AISRQIQTLE EQLGTQLFLR
NGRGVVPTPR GENFHRAVQS ALSLIQDASL EAMTGSQGNA LNIAILPTFG TRWLLPRISS
FVAAHPHINL NFATRIGIFD FDAEQLDAAI HIGKPNWPRA TCTFLMDETV APVCSPAFLV
SHHIKADSDL ADLPLIQMKS RPLAWDHWFD SLGITATPRA AMSFEQFMNV AQACIAGLGV
ALMPLFLIGP ELESGQLVLA SQHSVNSQSN YYLVSPDNRP LSKPLAAFSQ WLLQEVKAFT
TRDAG
|
|---|
| |