| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2291 |
|---|
| Symbol | |
|---|
| ID | 5670690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2736585 |
|---|
| End bp | 2737547 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641241211 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001506632 |
|---|
| Protein GI | 158314124 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.11333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.519031 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAAC CTCAGCCCAC GCTCGCTCAG CTACGAGCCC TCGTGGGTGT CGCGGATCAC
CGGCACTTCG GTCGGGCCGC GACCTCGCTG CACGTCAGCC AGCCGACGCT GTCGAGCGCC
GTCGCCGCGC TGGAGCGCAC CCTGGGTATC CAGCTCGTCG AGCGGACGAC CCGCAGCGTG
CTGCTGACGC CGGTGGGGGA GGAGATCGTC CAGCGGGCGC GCGGGGTGCT CGGGGCCGTC
GACGACATCG CCCAGCTCGC GGTGCGCGCG CGGGCGCCGC TGTCGGGCGA CATCCGGCTC
GGCGTCATCC CCACGGTGGC GCCCTACCTG CTGCCCCAGC TGCTGCCGTC GCTGAGGGCC
CGCCGGCCGG AGGCGCGGCT GCGGCTGCGC GAGGCGCAGA CGTCCGCGCT GCTGGAGGAG
CTGCGCGGCG GCTCGCTGGA CCTGGCGCTG CTCGCCCTGC CGACGGACGA GCCCGGGGTG
GCCGAGCTGC CGCTCTACGA CGAGGACTTC GTGCTCGTGA CGCCCGTCGA CCACCCGATG
GCCGGCAGCG CCGCGCTGCC GGTCTCCTCC CTGTGCGGCC GGGACCTGCT CCTCCTCGAG
GACGGCCACT GCTTCCGGGC GCAGGCCCTG GACGTCTGCC GCGAGGCCGG GGCACGCGAG
CGCAGTGCGC TGCGCGCGGC GAGCCTGTCC ACGATCGTGC AGATGGTCGC CGGCGGCCTG
GGACTGACGC TGATCCCGGC GGCGGCGGTG GGCGTCGAGG TGGGGGAGGG GCGCGGCCTG
GCGACGGCGA CCTTCCGTAA CCCGGCGCCG CGCCGGCGCA TCGGCCTCGC CTACCGGACG
ACCTCGGCCC GGGTGGCGGA CTGGACCCTG CTCGCGGCCG AGATCCGCGA GGCGCTGCCC
GGCACGGCCC TGGAGGTCAC GCCGGTGCCC GCACCCGAGC GGACACCGGC TCCCGTCGGC
TGA
|
|---|
| Protein sequence | MAQPQPTLAQ LRALVGVADH RHFGRAATSL HVSQPTLSSA VAALERTLGI QLVERTTRSV
LLTPVGEEIV QRARGVLGAV DDIAQLAVRA RAPLSGDIRL GVIPTVAPYL LPQLLPSLRA
RRPEARLRLR EAQTSALLEE LRGGSLDLAL LALPTDEPGV AELPLYDEDF VLVTPVDHPM
AGSAALPVSS LCGRDLLLLE DGHCFRAQAL DVCREAGARE RSALRAASLS TIVQMVAGGL
GLTLIPAAAV GVEVGEGRGL ATATFRNPAP RRRIGLAYRT TSARVADWTL LAAEIREALP
GTALEVTPVP APERTPAPVG
|
|---|
| |