More than 300 homologs were found in PanDaTox collection
for query gene Mvan_4113 on replicon NC_008726
Organism: Mycobacterium vanbaalenii PYR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  81.35 
 
 
488 aa  842    Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  100 
 
 
489 aa  1008    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  48.36 
 
 
504 aa  476  1e-133  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  49.8 
 
 
487 aa  462  1e-129  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  48.16 
 
 
488 aa  461  9.999999999999999e-129  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  48.77 
 
 
488 aa  453  1.0000000000000001e-126  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  48.45 
 
 
494 aa  451  1e-125  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  46.53 
 
 
504 aa  451  1e-125  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  47.96 
 
 
507 aa  447  1.0000000000000001e-124  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  49.79 
 
 
493 aa  439  9.999999999999999e-123  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  44.01 
 
 
474 aa  434  1e-120  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  46.22 
 
 
499 aa  434  1e-120  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  44.8 
 
 
472 aa  402  1e-111  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  42.74 
 
 
473 aa  401  9.999999999999999e-111  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  43.2 
 
 
474 aa  396  1e-109  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  43.2 
 
 
474 aa  396  1e-109  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  43 
 
 
474 aa  392  1e-108  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  42.68 
 
 
479 aa  389  1e-107  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  43.12 
 
 
473 aa  385  1e-106  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  42.51 
 
 
474 aa  387  1e-106  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  42.94 
 
 
487 aa  385  1e-105  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  43.41 
 
 
482 aa  384  1e-105  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  43.03 
 
 
475 aa  376  1e-103  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  42.62 
 
 
476 aa  378  1e-103  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  42.16 
 
 
476 aa  365  1e-100  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  40.12 
 
 
487 aa  365  1e-99  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  40.94 
 
 
478 aa  361  2e-98  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  40.43 
 
 
475 aa  344  2e-93  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  40.17 
 
 
486 aa  344  2.9999999999999997e-93  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  39.64 
 
 
509 aa  334  2e-90  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  38.82 
 
 
479 aa  332  1e-89  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  39.52 
 
 
471 aa  331  2e-89  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  38.62 
 
 
479 aa  330  5.0000000000000004e-89  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  39.45 
 
 
479 aa  328  1.0000000000000001e-88  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  39.44 
 
 
471 aa  327  2.0000000000000001e-88  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  36.27 
 
 
485 aa  324  2e-87  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  39.02 
 
 
418 aa  314  2.9999999999999996e-84  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  39.25 
 
 
418 aa  314  2.9999999999999996e-84  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  37.1 
 
 
494 aa  313  4.999999999999999e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  36.9 
 
 
494 aa  311  1e-83  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  37.76 
 
 
418 aa  310  4e-83  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  38.17 
 
 
418 aa  308  1.0000000000000001e-82  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  38.08 
 
 
418 aa  307  2.0000000000000002e-82  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  37.78 
 
 
482 aa  305  1.0000000000000001e-81  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  36.9 
 
 
494 aa  303  4.0000000000000003e-81  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  37.74 
 
 
469 aa  299  6e-80  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  38.13 
 
 
498 aa  294  3e-78  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  37.76 
 
 
455 aa  289  8e-77  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  38.16 
 
 
473 aa  288  2e-76  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  36.93 
 
 
473 aa  287  2.9999999999999996e-76  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  37.58 
 
 
473 aa  286  5e-76  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  37.95 
 
 
473 aa  281  2e-74  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  36.74 
 
 
479 aa  279  1e-73  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  36.32 
 
 
449 aa  274  3e-72  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  35.67 
 
 
449 aa  258  1e-67  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  29.83 
 
 
439 aa  164  4.0000000000000004e-39  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  28.54 
 
 
421 aa  161  2e-38  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  29.5 
 
 
425 aa  156  1e-36  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  30.32 
 
 
430 aa  155  2e-36  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  29.53 
 
 
425 aa  155  2e-36  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  29.64 
 
 
424 aa  155  2e-36  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  30.47 
 
 
424 aa  154  5e-36  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  28.78 
 
 
426 aa  152  2e-35  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  29.54 
 
 
432 aa  150  7e-35  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  29.7 
 
 
422 aa  149  1.0000000000000001e-34  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  29.09 
 
 
433 aa  148  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  27.04 
 
 
430 aa  147  5e-34  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  27.9 
 
 
424 aa  146  9e-34  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  27.58 
 
 
425 aa  128  2.0000000000000002e-28  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_04400  Soluble nickel-dependent hydrogenase, large subunit, HoxH  28.54 
 
 
419 aa  128  2.0000000000000002e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  27.59 
 
 
429 aa  129  2.0000000000000002e-28  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  27.84 
 
 
423 aa  126  7e-28  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  28.66 
 
 
458 aa  126  8.000000000000001e-28  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  27.97 
 
 
433 aa  125  2e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  26.94 
 
 
514 aa  124  5e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  27.78 
 
 
423 aa  124  6e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  26.96 
 
 
430 aa  122  9.999999999999999e-27  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  26.96 
 
 
430 aa  122  1.9999999999999998e-26  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  26.96 
 
 
430 aa  122  1.9999999999999998e-26  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  27.38 
 
 
488 aa  120  3.9999999999999996e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  26.42 
 
 
431 aa  120  7.999999999999999e-26  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_006369  lpl2387  hypothetical protein  25.31 
 
 
430 aa  119  9.999999999999999e-26  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  25.58 
 
 
432 aa  118  1.9999999999999998e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  24.07 
 
 
470 aa  117  3e-25  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  26.74 
 
 
433 aa  117  3.9999999999999997e-25  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_006368  lpp2532  hypothetical protein  25.1 
 
 
430 aa  115  2.0000000000000002e-24  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  27.39 
 
 
428 aa  115  2.0000000000000002e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  25.51 
 
 
410 aa  114  4.0000000000000004e-24  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  26.34 
 
 
431 aa  113  9e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  25.74 
 
 
432 aa  111  3e-23  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  27.48 
 
 
428 aa  110  7.000000000000001e-23  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  26.92 
 
 
410 aa  109  1e-22  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  26.59 
 
 
481 aa  108  2e-22  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  24.32 
 
 
456 aa  107  6e-22  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  26 
 
 
526 aa  106  9e-22  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  25.86 
 
 
526 aa  105  2e-21  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  25.62 
 
 
456 aa  104  4e-21  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  25.25 
 
 
455 aa  103  9e-21  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  25.41 
 
 
488 aa  102  2e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  25.2 
 
 
455 aa  102  2e-20  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
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