More than 300 homologs were found in PanDaTox collection
for query gene Fnod_1208 on replicon NC_009718
Organism: Fervidobacterium nodosum Rt17-B1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009718  Fnod_1208  cell envelope-related transcriptional attenuator  100 
 
 
330 aa  655    Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000721845  n/a   
 
 
-
 
NC_008261  CPF_2170  cell envelope-related function transcriptional attenuator  36.9 
 
 
473 aa  175  9.999999999999999e-43  Clostridium perfringens ATCC 13124  Bacteria  normal  0.582429  n/a   
 
 
-
 
NC_008262  CPR_0271  cell envelope-related function transcriptional attenuator  37.93 
 
 
340 aa  175  9.999999999999999e-43  Clostridium perfringens SM101  Bacteria  normal  0.968761  n/a   
 
 
-
 
NC_008261  CPF_0280  putative transcriptional regulator  37.55 
 
 
340 aa  173  2.9999999999999996e-42  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2102  cell envelope-related function transcriptional attenuator, LytR/CpsA family  33.11 
 
 
327 aa  172  9e-42  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.246536 
 
 
-
 
NC_008262  CPR_1881  cell envelope-related function transcriptional attenuator  38.94 
 
 
460 aa  170  3e-41  Clostridium perfringens SM101  Bacteria  normal  0.723477  n/a   
 
 
-
 
NC_008261  CPF_0612  putative transcriptional regulator  37.99 
 
 
339 aa  159  5e-38  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0598  cell envelope-related function transcriptional attenuator  37.08 
 
 
337 aa  159  5e-38  Clostridium perfringens SM101  Bacteria  normal  0.195928  n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  31.33 
 
 
319 aa  143  3e-33  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_010001  Cphy_2795  cell envelope-related transcriptional attenuator  34.14 
 
 
424 aa  140  1.9999999999999998e-32  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000153391  n/a   
 
 
-
 
NC_010001  Cphy_3783  cell envelope-related transcriptional attenuator  34.46 
 
 
367 aa  134  3e-30  Clostridium phytofermentans ISDg  Bacteria  normal  0.1003  n/a   
 
 
-
 
NC_002976  SERP0932  transcriptional regulator, putative  31.88 
 
 
329 aa  130  3e-29  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  33.59 
 
 
308 aa  130  3e-29  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_009487  SaurJH9_1423  cell envelope-related transcriptional attenuator  32.73 
 
 
327 aa  129  5.0000000000000004e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.302612  n/a   
 
 
-
 
NC_009632  SaurJH1_1451  transcription attenuator LytR  32.73 
 
 
327 aa  129  5.0000000000000004e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2794  cell envelope-related transcriptional attenuator  35.59 
 
 
476 aa  126  6e-28  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000218049  n/a   
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  33.87 
 
 
509 aa  121  1.9999999999999998e-26  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0638  cell envelope-related transcriptional attenuator  31.7 
 
 
294 aa  120  4.9999999999999996e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5383  membrane-bound transcriptional regulator LytR  29.57 
 
 
302 aa  119  9e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  30.96 
 
 
563 aa  117  1.9999999999999998e-25  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  29.88 
 
 
414 aa  117  1.9999999999999998e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  35.38 
 
 
411 aa  118  1.9999999999999998e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  36.11 
 
 
377 aa  116  6e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  29.41 
 
 
490 aa  115  6.9999999999999995e-25  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_010001  Cphy_3892  cell envelope-related transcriptional attenuator  33.78 
 
 
453 aa  115  1.0000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  31.39 
 
 
419 aa  114  2.0000000000000002e-24  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  33.01 
 
 
445 aa  112  7.000000000000001e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_010718  Nther_2377  cell envelope-related transcriptional attenuator  29.66 
 
 
344 aa  112  9e-24  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00145979  normal 
 
 
-
 
NC_010001  Cphy_2557  cell envelope-related transcriptional attenuator  33.33 
 
 
263 aa  110  3e-23  Clostridium phytofermentans ISDg  Bacteria  normal  0.0157477  n/a   
 
 
-
 
NC_005945  BAS5115  membrane-bound transcriptional regulator LytR  27.89 
 
 
303 aa  110  4.0000000000000004e-23  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5506  membrane-bound transcriptional regulator LytR  27.89 
 
 
303 aa  110  4.0000000000000004e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00691653  n/a   
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  29.66 
 
 
418 aa  110  4.0000000000000004e-23  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  32.87 
 
 
380 aa  110  4.0000000000000004e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  31.8 
 
 
335 aa  110  4.0000000000000004e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_5355  membrane-bound transcriptional regulator LytR  29.57 
 
 
303 aa  110  4.0000000000000004e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK4961  membrane-bound transcriptional regulator LytR  27.89 
 
 
303 aa  110  5e-23  Bacillus cereus E33L  Bacteria  normal  0.0205697  n/a   
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  31.44 
 
 
495 aa  109  7.000000000000001e-23  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  31.65 
 
 
497 aa  109  7.000000000000001e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  29.76 
 
 
527 aa  107  2e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_010184  BcerKBAB4_5058  membrane-bound transcriptional regulator LytR  31.43 
 
 
304 aa  107  2e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5387  membrane-bound transcriptional regulator LytR  30.17 
 
 
299 aa  107  3e-22  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5436  membrane-bound transcriptional regulator LytR  30.45 
 
 
302 aa  107  4e-22  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3856  cell envelope-related transcriptional attenuator  27.34 
 
 
451 aa  107  4e-22  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  31.84 
 
 
504 aa  105  8e-22  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  34.6 
 
 
405 aa  105  9e-22  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  30.68 
 
 
408 aa  105  1e-21  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  30 
 
 
390 aa  104  2e-21  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  31.02 
 
 
505 aa  104  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_010320  Teth514_2233  cell envelope-related transcriptional attenuator  29.76 
 
 
303 aa  103  3e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1540  cell envelope-related transcriptional attenuator  29.17 
 
 
328 aa  103  3e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.112437  n/a   
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  25.91 
 
 
356 aa  103  3e-21  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_011772  BCG9842_B5566  membrane-bound transcriptional regulator LytR  27.39 
 
 
304 aa  103  4e-21  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  26.72 
 
 
353 aa  103  4e-21  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_011830  Dhaf_3430  cell envelope-related transcriptional attenuator  34.25 
 
 
439 aa  102  7e-21  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0225853  n/a   
 
 
-
 
NC_008148  Rxyl_0152  cell envelope-related transcriptional attenuator  33.49 
 
 
271 aa  102  1e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1005  cell envelope-related transcriptional attenuator  30.08 
 
 
285 aa  101  1e-20  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3582  cell envelope-related transcriptional attenuator  31.3 
 
 
492 aa  101  2e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  29.17 
 
 
304 aa  101  2e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_009674  Bcer98_3796  membrane-bound transcriptional regulator LytR  28.52 
 
 
302 aa  100  4e-20  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.0000323774  n/a   
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  32.78 
 
 
520 aa  99.8  6e-20  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_008346  Swol_1921  cell envelope-related transcriptional attenuator  28.9 
 
 
406 aa  99.8  6e-20  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.116318  n/a   
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  34.18 
 
 
436 aa  99.4  7e-20  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2524  cell envelope-related transcriptional attenuator  30.92 
 
 
492 aa  99  1e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_1876  cell envelope-related transcriptional attenuator  28.63 
 
 
455 aa  98.6  1e-19  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000275813  normal 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  30.04 
 
 
383 aa  99  1e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3046  cell envelope-related transcriptional attenuator  32.98 
 
 
322 aa  99  1e-19  Geobacillus sp. WCH70  Bacteria  normal  0.634845  n/a   
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  33.68 
 
 
560 aa  98.2  1e-19  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_009487  SaurJH9_2334  cell envelope-related transcriptional attenuator  32.37 
 
 
318 aa  98.6  1e-19  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.591324  n/a   
 
 
-
 
NC_009632  SaurJH1_2377  transcription attenuator LytR  32.37 
 
 
318 aa  98.6  1e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  33.16 
 
 
545 aa  98.2  2e-19  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  30.26 
 
 
443 aa  97.8  2e-19  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  32.35 
 
 
409 aa  98.2  2e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_002976  SERP0640  transcriptional regulator, putative  29.14 
 
 
412 aa  97.4  3e-19  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.00230389  n/a   
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  27.78 
 
 
426 aa  97.1  3e-19  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  26.34 
 
 
512 aa  97.1  4e-19  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  30.1 
 
 
516 aa  96.7  4e-19  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  32.73 
 
 
434 aa  97.1  4e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_002976  SERP1893  transcriptional regulator, putative  27.58 
 
 
316 aa  96.7  5e-19  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  33.97 
 
 
375 aa  95.5  1e-18  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  27.8 
 
 
734 aa  95.1  1e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  33.97 
 
 
375 aa  95.1  1e-18  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  33.97 
 
 
375 aa  95.1  1e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  29.84 
 
 
349 aa  95.5  1e-18  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1857  cell envelope-related transcriptional attenuator  30.73 
 
 
456 aa  95.5  1e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  0.046941  normal 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  33.75 
 
 
307 aa  95.5  1e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  34.2 
 
 
377 aa  94.7  2e-18  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1875  cell envelope-related transcriptional attenuator  28.63 
 
 
344 aa  94.4  2e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  33.97 
 
 
375 aa  95.1  2e-18  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4851  cell envelope-related transcriptional attenuator  33.51 
 
 
432 aa  95.1  2e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  33.97 
 
 
375 aa  95.1  2e-18  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  36.69 
 
 
573 aa  94.7  2e-18  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0519  cell envelope-related transcriptional attenuator  27.3 
 
 
338 aa  94.7  2e-18  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  30.13 
 
 
528 aa  94.4  2e-18  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
NC_013530  Xcel_2595  cell envelope-related transcriptional attenuator  32.9 
 
 
313 aa  94.7  2e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1762  cell envelope-like transcriptional attenuator  28.78 
 
 
501 aa  94.4  2e-18  'Nostoc azollae' 0708  Bacteria  normal  0.103676  n/a   
 
 
-
 
NC_009513  Lreu_1057  cell envelope-related transcriptional attenuator  28.63 
 
 
333 aa  94.4  3e-18  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.0371332  n/a   
 
 
-
 
NC_013204  Elen_3081  cell envelope-related transcriptional attenuator  33.16 
 
 
531 aa  94  3e-18  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  34.9 
 
 
377 aa  94  3e-18  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  28.43 
 
 
549 aa  94  3e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  33.68 
 
 
374 aa  93.6  4e-18  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>