Gene Cphy_3892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_3892 
Symbol 
ID5742290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp4788544 
End bp4789905 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content33% 
IMG OID641295006 
Productcell envelope-related transcriptional attenuator 
Protein accessionYP_001560978 
Protein GI160882010 
COG category[K] Transcription 
COG ID[COG1316] Transcriptional regulator 
TIGRFAM ID[TIGR00350] cell envelope-related function transcriptional attenuator common domain 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTTT GGGTTTTTAA TCATAAGAAA ACTAAAGAAT CAAATGACTT ATCGGAGGAA 
GAATCAAACA ACTTATTGGA AGAAGGATCA AATGATTTAT TAGAAAAATC AAATGGCTTA
TTAGAAGAAT CAAATAACTT CTTGGATGAA GAGCAAAATA ACTTATTGGA TGAAGAGCAA
AATGACTTCT TGAATGAAGA ATCAAATGAC TTATTAGAGA AAGATATAAA TGACTTATCG
GAAGAAGATT CAATTTATTT AAAATGGAAG AAAAAATACC GTCATTTTTT AGTAGGTTCC
CTAGTAATTG TATGTATAGG AATCGTATCA TTTACCGTTG GAACACGGTC AGGACGAGAA
ATTTTTTATA ATTTAGCAGG TTTATTTCTG CATGAGGCCA TGGACACTTC ACCAGAAGTT
CTTCAACCAT TAGTAACGCC TTACCCAGAT GATGATGTGG ATTCCGAGGA TGTGGTTGAT
CTCTTTTCAG AAACAGATAT CACAGAAGTA TCGGATAAAA ATATCATACC TAGAAGTGAG
GAGGGTGTAG ATAATTTTCT GTTACTCGGA ATTGAAGAAA TTAATAACGC AAGAAATACA
GATTCTATTA TGATTGTCTC CATTAATAAA AAAAGCAAGG AAATAACACT AGTATCAATA
CTTCGTGATA CGTATATTGA ATATGAGAAT CGAGCTAGAA AATTAAATGC CTATTATGCA
GCTGGAGGAA TGAGTACACT CATCAGTGTA ATTGAGGAAA ATTATCGTAT TAAAATAGAT
GGTTATGCCT ATGTAAACTT TGAGGCATTT GAGAAAGTTG TTGATGAATT AGGTGGAGTT
GATATAGAAC TAGGAGCGAA AGAAGCTGCT TACTTAAATG TAAAAAATTA TATTTCAAAT
CCTACCTATC GGAATGTAAA AGCTGGAATG AATCATCTTA ACGGTAACCA AGCACTTGGC
TATGCAAGGG TTAGAAAGGT TGAAACTTTA GGTGGAGTGA ATGACGATTA TGGAAGAACC
TTAAGACAGC GTCGTTTACT AACTGCTATA TTTGATAAGT ATAAAAAGAA AAATATATTT
GACCTATTAT CTATCACAAC AAAATGTCTA TCCTATGTAA AAACGAATGT TACTAGTGGG
CAAATATCAG ATACAATAGA ATTTATTGTT GAGGATGGAA TAACAAGCTT AAGTTCAGAA
CGTTTCCCTT ACGATGGATT GTTTGAGGAT CCTCATGAGT ATAATGGTAT TACTTATCCT
ATTCTTCCTA ATTGGGAAGA AAATATAGTT CGCTTGTATC AAGATATATA CAAAGACACG
GAAGAGGAAG CAAGAGCTGC GTATTTAGCT ACGGAGAATT AG
 
Protein sequence
MKVWVFNHKK TKESNDLSEE ESNNLLEEGS NDLLEKSNGL LEESNNFLDE EQNNLLDEEQ 
NDFLNEESND LLEKDINDLS EEDSIYLKWK KKYRHFLVGS LVIVCIGIVS FTVGTRSGRE
IFYNLAGLFL HEAMDTSPEV LQPLVTPYPD DDVDSEDVVD LFSETDITEV SDKNIIPRSE
EGVDNFLLLG IEEINNARNT DSIMIVSINK KSKEITLVSI LRDTYIEYEN RARKLNAYYA
AGGMSTLISV IEENYRIKID GYAYVNFEAF EKVVDELGGV DIELGAKEAA YLNVKNYISN
PTYRNVKAGM NHLNGNQALG YARVRKVETL GGVNDDYGRT LRQRRLLTAI FDKYKKKNIF
DLLSITTKCL SYVKTNVTSG QISDTIEFIV EDGITSLSSE RFPYDGLFED PHEYNGITYP
ILPNWEENIV RLYQDIYKDT EEEARAAYLA TEN