More than 300 homologs were found in PanDaTox collection
for query gene Smed_0757 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0757  binding-protein-dependent transport systems inner membrane component  100 
 
 
265 aa  508  1e-143  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.168299 
 
 
-
 
NC_008786  Veis_3192  binding-protein-dependent transport systems inner membrane component  51.64 
 
 
275 aa  244  9.999999999999999e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4437  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
264 aa  154  1e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011982  Avi_8304  ABC transporter  37.55 
 
 
265 aa  150  2e-35  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_008254  Meso_1862  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
272 aa  148  1.0000000000000001e-34  Chelativorans sp. BNC1  Bacteria  normal  0.148364  n/a   
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
264 aa  147  2.0000000000000003e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
263 aa  147  2.0000000000000003e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  35.86 
 
 
264 aa  146  3e-34  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
264 aa  146  4.0000000000000006e-34  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
264 aa  145  6e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_009485  BBta_1834  ABC transporter, permease protein  35.46 
 
 
269 aa  145  9e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.632575 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
264 aa  143  2e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
264 aa  143  2e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
264 aa  142  6e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  36.76 
 
 
264 aa  142  7e-33  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  36.47 
 
 
264 aa  141  9.999999999999999e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0306  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
264 aa  139  6e-32  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0756  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
264 aa  139  6e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.533361  normal 
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  36.08 
 
 
264 aa  138  7e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  32.91 
 
 
282 aa  136  3.0000000000000003e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
282 aa  136  4e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  32.91 
 
 
282 aa  136  4e-31  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0203  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
265 aa  136  4e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.973641  normal  0.52762 
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  35.32 
 
 
275 aa  135  6.0000000000000005e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
264 aa  135  7.000000000000001e-31  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_010681  Bphyt_2374  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
270 aa  132  5e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
272 aa  132  6.999999999999999e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
272 aa  132  6.999999999999999e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_009485  BBta_6500  ABC transporter permease  34.75 
 
 
264 aa  132  6.999999999999999e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.537768  normal 
 
 
-
 
NC_009439  Pmen_4203  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
284 aa  130  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  33.6 
 
 
264 aa  129  4.0000000000000003e-29  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_009621  Smed_6247  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
266 aa  129  6e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.487966 
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
278 aa  128  8.000000000000001e-29  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0569  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
268 aa  128  8.000000000000001e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0474626  normal 
 
 
-
 
NC_007952  Bxe_B2705  spermidine/putrescine ABC transporter inner membrane protein  33.86 
 
 
265 aa  128  1.0000000000000001e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.628706  normal 
 
 
-
 
NC_007948  Bpro_4377  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
265 aa  127  2.0000000000000002e-28  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0448  binding-protein-dependent transport systems inner membrane component  36.32 
 
 
275 aa  125  5e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003666  probable permease of ABC transporter  33.46 
 
 
282 aa  125  5e-28  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
264 aa  125  5e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7801  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
284 aa  125  7e-28  Burkholderia phymatum STM815  Bacteria  normal  0.109099  normal 
 
 
-
 
NC_012854  Rleg_6542  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
266 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.208097 
 
 
-
 
NC_010625  Bphy_6578  binding-protein-dependent transport systems inner membrane component  29.72 
 
 
265 aa  123  2e-27  Burkholderia phymatum STM815  Bacteria  normal  0.496226  normal  0.414836 
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
269 aa  124  2e-27  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
NC_010681  Bphyt_1894  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
265 aa  124  2e-27  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00977235  normal  0.387076 
 
 
-
 
NC_009512  Pput_1953  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
268 aa  124  2e-27  Pseudomonas putida F1  Bacteria  normal  0.911704  normal 
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
268 aa  124  2e-27  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_008786  Veis_2367  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
597 aa  123  4e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6540  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
270 aa  122  5e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.199847 
 
 
-
 
NC_010501  PputW619_1933  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
269 aa  122  5e-27  Pseudomonas putida W619  Bacteria  normal  normal  0.0161656 
 
 
-
 
NC_011988  Avi_6091  ABC transporter membrane spanning protein (polyamine)  34.32 
 
 
266 aa  122  7e-27  Agrobacterium vitis S4  Bacteria  normal  0.417915  n/a   
 
 
-
 
NC_011368  Rleg2_5591  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
266 aa  122  8e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4417  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
268 aa  121  9e-27  Polaromonas sp. JS666  Bacteria  normal  0.303148  normal 
 
 
-
 
NC_009654  Mmwyl1_2486  binding-protein-dependent transport systems inner membrane component  32.93 
 
 
268 aa  121  9.999999999999999e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal 
 
 
-
 
NC_007951  Bxe_A3472  ABC spermidine/putrescine transporter, innermembrane subunit  34.18 
 
 
275 aa  121  9.999999999999999e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.84629 
 
 
-
 
NC_008044  TM1040_2990  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
391 aa  121  9.999999999999999e-27  Ruegeria sp. TM1040  Bacteria  normal  0.0689786  normal  0.478679 
 
 
-
 
NC_010511  M446_3856  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
270 aa  121  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  33.61 
 
 
269 aa  120  1.9999999999999998e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_010625  Bphy_6036  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
280 aa  120  1.9999999999999998e-26  Burkholderia phymatum STM815  Bacteria  normal  0.475506  normal  0.0258331 
 
 
-
 
NC_009636  Smed_1718  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
261 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.367092  normal 
 
 
-
 
NC_010087  Bmul_6002  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
265 aa  119  4.9999999999999996e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.176391  normal 
 
 
-
 
NC_009668  Oant_3714  binding-protein-dependent transport systems inner membrane component  34.5 
 
 
264 aa  119  4.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.50413  n/a   
 
 
-
 
NC_007958  RPD_1033  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
550 aa  118  9e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.957073  normal 
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
269 aa  118  9.999999999999999e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_010676  Bphyt_6153  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
264 aa  118  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA1105  polyamine ABC transporter, permease protein  28.4 
 
 
267 aa  116  3e-25  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_7052  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
265 aa  116  3e-25  Burkholderia phymatum STM815  Bacteria  normal  normal  0.34418 
 
 
-
 
NC_008688  Pden_4875  binding-protein-dependent transport systems inner membrane component  29.89 
 
 
587 aa  116  3e-25  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.432532 
 
 
-
 
NC_012791  Vapar_4699  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
272 aa  116  3e-25  Variovorax paradoxus S110  Bacteria  normal  0.607966  n/a   
 
 
-
 
NC_011370  Rleg2_6319  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
311 aa  116  3e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_2209  putrescine ABC transporter permease  33.73 
 
 
264 aa  116  3.9999999999999997e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  0.052298  n/a   
 
 
-
 
NC_007493  RSP_1886  ABC polyamine/opine transporter, inner membrane subunit  31.32 
 
 
302 aa  116  3.9999999999999997e-25  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0261044  n/a   
 
 
-
 
NC_009049  Rsph17029_0533  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
302 aa  116  3.9999999999999997e-25  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0329  spermidine/putrescine ABC transporter, permease protein  33.04 
 
 
258 aa  115  6.9999999999999995e-25  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0303  spermidine/putrescine ABC transporter, permease protein  33.04 
 
 
242 aa  115  6.9999999999999995e-25  Brucella ovis ATCC 25840  Bacteria  normal  0.102873  n/a   
 
 
-
 
NC_009439  Pmen_4000  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
275 aa  114  1.0000000000000001e-24  Pseudomonas mendocina ymp  Bacteria  normal  0.360042  normal 
 
 
-
 
NC_011662  Tmz1t_0427  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
274 aa  113  2.0000000000000002e-24  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2149  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
317 aa  114  2.0000000000000002e-24  Paracoccus denitrificans PD1222  Bacteria  normal  0.964128  normal 
 
 
-
 
NC_008687  Pden_3462  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
317 aa  114  2.0000000000000002e-24  Paracoccus denitrificans PD1222  Bacteria  normal  0.397103  normal 
 
 
-
 
NC_011004  Rpal_5130  binding-protein-dependent transport systems inner membrane component  31.45 
 
 
596 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3736  binding-protein-dependent transport systems inner membrane component  30.49 
 
 
276 aa  114  2.0000000000000002e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.282406  normal 
 
 
-
 
NC_008688  Pden_4602  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
591 aa  114  2.0000000000000002e-24  Paracoccus denitrificans PD1222  Bacteria  normal  0.621124  normal 
 
 
-
 
NC_011368  Rleg2_4995  binding-protein-dependent transport systems inner membrane component  30.21 
 
 
265 aa  113  3e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.887799  normal 
 
 
-
 
NC_014165  Tbis_1588  binding-protein-dependent transporter inner membrane component  34.68 
 
 
279 aa  113  4.0000000000000004e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.148375 
 
 
-
 
NC_007952  Bxe_B1507  ABC spermidine/putrescine transporter, inner membrane subunit  29.13 
 
 
264 aa  112  5e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.375803  normal  0.0420414 
 
 
-
 
NC_008391  Bamb_4294  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
279 aa  112  6e-24  Burkholderia ambifaria AMMD  Bacteria  normal  0.144254  normal 
 
 
-
 
NC_010511  M446_3864  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
261 aa  112  8.000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_0084  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
272 aa  111  1.0000000000000001e-23  Natrialba magadii ATCC 43099  Archaea  normal  0.0395984  n/a   
 
 
-
 
NC_009674  Bcer98_1009  ornithine carbamoyltransferase  27.16 
 
 
266 aa  111  1.0000000000000001e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2380  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
279 aa  111  1.0000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  0.576146  normal 
 
 
-
 
NC_012880  Dd703_1788  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
275 aa  111  1.0000000000000001e-23  Dickeya dadantii Ech703  Bacteria  normal  0.0709875  n/a   
 
 
-
 
NC_008786  Veis_4689  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
276 aa  111  1.0000000000000001e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.363302  normal 
 
 
-
 
NC_008254  Meso_2370  binding-protein-dependent transport systems inner membrane component  28.19 
 
 
274 aa  111  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  0.560014  n/a   
 
 
-
 
NC_004578  PSPTO_2665  spermidine/putrescine ABC transporter, permease protein, putative  32.02 
 
 
271 aa  110  2.0000000000000002e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0357719  n/a   
 
 
-
 
NC_007650  BTH_II0645  polyamine ABC transporter, permease protein  32.23 
 
 
279 aa  110  2.0000000000000002e-23  Burkholderia thailandensis E264  Bacteria  normal  0.637437  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1203  ornithine carbamoyltransferase  26.1 
 
 
266 aa  111  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2916  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
274 aa  110  2.0000000000000002e-23  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4359  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
591 aa  110  3e-23  Polaromonas sp. JS666  Bacteria  normal  0.184868  normal  0.311507 
 
 
-
 
NC_008786  Veis_4042  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
278 aa  109  4.0000000000000004e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4005  spermidine/putrescine ABC transporter, permease protein  26.1 
 
 
266 aa  109  5e-23  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000178374 
 
 
-
 
NC_011725  BCB4264_A1339  spermidine/putrescine ABC transporter, permease protein  26.1 
 
 
266 aa  109  5e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
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