Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2990 |
Symbol | |
ID | 4078020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 3156106 |
End bp | 3157281 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638008319 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_614984 |
Protein GI | 99082830 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0689786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.478679 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCACTTA CACCTGTTCA AAACCAAACC CCCGCTTTCA CCGCCGCAGT GTCGGCCGGC GCAGGGGCCT TCTTTGGCCT CTTCGTGGGT ACAGCTCAGG GATCGGGCCT GCTTGGCCTG GTCATCGGAG CGGTCCTTCT AGGCGCACTC GGATTTGTGT TCGCATCTAT GACAGCGCAG GAAAAACCGA TCCGCTGGGC CGTTCTGGTC GCTTTTGCGA TTGCTGGCTT TGTGCTCGGC GGCCTTCCTG CGTTGGTGAT CGGCGCGCTC TTTGGCTGGT TCGCTGGCTG GTTCATCTTC TGGCTTGCCA CATCGCGCTA TCGCGCAACC CTCGTTCCGT ATCTGACACC GGGGCAAGTG CTTTGGCACT ATACGTTCCG GGTCATCTGT GGTGCGATCT TTGTGTTCCT GATCACGCCG ATCCTTGTTG TGATGCCGCT GTCGTTCAAC GCGGAAGACT TCTTTACCTT CACGCCGGAA ATGCTGCGGT TTGATCCCGA AGGCTACTCA CTCAAGCACT ATCGCGACTT CTTCACGAAT GCGGACTGGC AGCAGGCGCT GTGGAATTCG CTTTCGATTG CTCCGATGGC GACGCTCCTG TCCGTGGGTT TTGGAACGCT GGCCGCAATC GGTCTCAGCC AGCCTCATGT GCCTTTCCGT CGCGCGATCA TGGCGATCCT GATTTCGCCG ATGATTGTGC CGCTGATCAT TTCGGCTGCG GGCATGTACT TTTTCTACAG CCGGATCGGC CTGCAGGGCA CCTACTTTGG CGTGGTTCTG GCGCATGCGG CACTGGGCAT TCCCTTTGTG ATTATCACCG TGACCGCGAC GCTTGTGGGA TTTGACCGTT CTTTGACCCG CGCTGCGGCG AACATGGGCG CTGGTCCTGT GACCACGTTC TTCCGGGTGC AGATGCCGCT CATTTTGCCT GGCGTGATTT CGGGTGGCCT TTTTGCATTC ATCACGTCGT TCGACGAAGT GGTCGTGGTG CTCTTTGTCG GCTCGGCAGG TCAGAAAACG CTACCATGGC AGATGTTTAC TGGCCTACGT GAGCAGATCT CGCCCACGAT CCTTGCAGTC GCAACAATCC TAGTGGTGAT CTCGATCTGT CTGCTGACCA CCGTGGAGAT GCTGCGGCGG CGGAGTGAAC GGCTTCGAGG CATGAGCCCG AGCTAA
|
Protein sequence | MALTPVQNQT PAFTAAVSAG AGAFFGLFVG TAQGSGLLGL VIGAVLLGAL GFVFASMTAQ EKPIRWAVLV AFAIAGFVLG GLPALVIGAL FGWFAGWFIF WLATSRYRAT LVPYLTPGQV LWHYTFRVIC GAIFVFLITP ILVVMPLSFN AEDFFTFTPE MLRFDPEGYS LKHYRDFFTN ADWQQALWNS LSIAPMATLL SVGFGTLAAI GLSQPHVPFR RAIMAILISP MIVPLIISAA GMYFFYSRIG LQGTYFGVVL AHAALGIPFV IITVTATLVG FDRSLTRAAA NMGAGPVTTF FRVQMPLILP GVISGGLFAF ITSFDEVVVV LFVGSAGQKT LPWQMFTGLR EQISPTILAV ATILVVISIC LLTTVEMLRR RSERLRGMSP S
|
| |