Gene TM1040_2990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2990 
Symbol 
ID4078020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp3156106 
End bp3157281 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content58% 
IMG OID638008319 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_614984 
Protein GI99082830 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1177] ABC-type spermidine/putrescine transport system, permease component II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0689786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.478679 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTTA CACCTGTTCA AAACCAAACC CCCGCTTTCA CCGCCGCAGT GTCGGCCGGC 
GCAGGGGCCT TCTTTGGCCT CTTCGTGGGT ACAGCTCAGG GATCGGGCCT GCTTGGCCTG
GTCATCGGAG CGGTCCTTCT AGGCGCACTC GGATTTGTGT TCGCATCTAT GACAGCGCAG
GAAAAACCGA TCCGCTGGGC CGTTCTGGTC GCTTTTGCGA TTGCTGGCTT TGTGCTCGGC
GGCCTTCCTG CGTTGGTGAT CGGCGCGCTC TTTGGCTGGT TCGCTGGCTG GTTCATCTTC
TGGCTTGCCA CATCGCGCTA TCGCGCAACC CTCGTTCCGT ATCTGACACC GGGGCAAGTG
CTTTGGCACT ATACGTTCCG GGTCATCTGT GGTGCGATCT TTGTGTTCCT GATCACGCCG
ATCCTTGTTG TGATGCCGCT GTCGTTCAAC GCGGAAGACT TCTTTACCTT CACGCCGGAA
ATGCTGCGGT TTGATCCCGA AGGCTACTCA CTCAAGCACT ATCGCGACTT CTTCACGAAT
GCGGACTGGC AGCAGGCGCT GTGGAATTCG CTTTCGATTG CTCCGATGGC GACGCTCCTG
TCCGTGGGTT TTGGAACGCT GGCCGCAATC GGTCTCAGCC AGCCTCATGT GCCTTTCCGT
CGCGCGATCA TGGCGATCCT GATTTCGCCG ATGATTGTGC CGCTGATCAT TTCGGCTGCG
GGCATGTACT TTTTCTACAG CCGGATCGGC CTGCAGGGCA CCTACTTTGG CGTGGTTCTG
GCGCATGCGG CACTGGGCAT TCCCTTTGTG ATTATCACCG TGACCGCGAC GCTTGTGGGA
TTTGACCGTT CTTTGACCCG CGCTGCGGCG AACATGGGCG CTGGTCCTGT GACCACGTTC
TTCCGGGTGC AGATGCCGCT CATTTTGCCT GGCGTGATTT CGGGTGGCCT TTTTGCATTC
ATCACGTCGT TCGACGAAGT GGTCGTGGTG CTCTTTGTCG GCTCGGCAGG TCAGAAAACG
CTACCATGGC AGATGTTTAC TGGCCTACGT GAGCAGATCT CGCCCACGAT CCTTGCAGTC
GCAACAATCC TAGTGGTGAT CTCGATCTGT CTGCTGACCA CCGTGGAGAT GCTGCGGCGG
CGGAGTGAAC GGCTTCGAGG CATGAGCCCG AGCTAA
 
Protein sequence
MALTPVQNQT PAFTAAVSAG AGAFFGLFVG TAQGSGLLGL VIGAVLLGAL GFVFASMTAQ 
EKPIRWAVLV AFAIAGFVLG GLPALVIGAL FGWFAGWFIF WLATSRYRAT LVPYLTPGQV
LWHYTFRVIC GAIFVFLITP ILVVMPLSFN AEDFFTFTPE MLRFDPEGYS LKHYRDFFTN
ADWQQALWNS LSIAPMATLL SVGFGTLAAI GLSQPHVPFR RAIMAILISP MIVPLIISAA
GMYFFYSRIG LQGTYFGVVL AHAALGIPFV IITVTATLVG FDRSLTRAAA NMGAGPVTTF
FRVQMPLILP GVISGGLFAF ITSFDEVVVV LFVGSAGQKT LPWQMFTGLR EQISPTILAV
ATILVVISIC LLTTVEMLRR RSERLRGMSP S