More than 300 homologs were found in PanDaTox collection
for query gene RPB_0933 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_0933  binding-protein dependent transport system inner membrane protein  100 
 
 
261 aa  512  1e-144  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3864  binding-protein-dependent transport systems inner membrane component  90.42 
 
 
261 aa  432  1e-120  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3747  binding-protein-dependent transport systems inner membrane component  56.2 
 
 
254 aa  281  5.000000000000001e-75  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1186  binding-protein-dependent transport systems inner membrane component  55.19 
 
 
257 aa  279  3e-74  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.409709  n/a   
 
 
-
 
NC_008786  Veis_0834  binding-protein-dependent transport systems inner membrane component  50 
 
 
264 aa  256  2e-67  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0267  binding-protein-dependent transport systems inner membrane component  53.94 
 
 
276 aa  253  3e-66  Variovorax paradoxus S110  Bacteria  normal  0.0872978  n/a   
 
 
-
 
NC_010725  Mpop_3781  binding-protein-dependent transport systems inner membrane component  65.88 
 
 
177 aa  243  1.9999999999999999e-63  Methylobacterium populi BJ001  Bacteria  normal  0.19201  normal  0.101834 
 
 
-
 
NC_009620  Smed_4214  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
281 aa  127  3e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5126  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
280 aa  127  3e-28  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  31.02 
 
 
290 aa  124  1e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1369  ABC transporter membrane protein  31.2 
 
 
272 aa  124  2e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0458182 
 
 
-
 
NC_008541  Arth_3035  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
298 aa  123  3e-27  Arthrobacter sp. FB24  Bacteria  normal  0.30367  n/a   
 
 
-
 
NC_011832  Mpal_1145  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
279 aa  120  1.9999999999999998e-26  Methanosphaerula palustris E1-9c  Archaea  normal  0.208956  normal 
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
278 aa  120  1.9999999999999998e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_011368  Rleg2_4541  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
283 aa  119  4.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.193679 
 
 
-
 
NC_012854  Rleg_6387  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
283 aa  119  6e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.199649  normal  0.0607956 
 
 
-
 
NC_014211  Ndas_4937  binding-protein-dependent transport systems inner membrane component  30.87 
 
 
287 aa  118  7e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0773955  normal 
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  32.66 
 
 
272 aa  117  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
258 aa  116  3.9999999999999997e-25  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6162  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
262 aa  114  1.0000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.577279 
 
 
-
 
NC_007333  Tfu_1692  putative ABC transporter membrane protein  32.17 
 
 
281 aa  114  1.0000000000000001e-24  Thermobifida fusca YX  Bacteria  hitchhiker  0.00465779  n/a   
 
 
-
 
NC_013159  Svir_34320  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.5 
 
 
273 aa  114  1.0000000000000001e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
273 aa  114  1.0000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
273 aa  114  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
279 aa  113  4.0000000000000004e-24  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_013595  Sros_1818  ABC transporter, permease protein  29.96 
 
 
263 aa  113  4.0000000000000004e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.493092 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
279 aa  112  5e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
273 aa  112  6e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  29.7 
 
 
273 aa  111  1.0000000000000001e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_013093  Amir_5423  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
298 aa  111  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  28.69 
 
 
285 aa  110  2.0000000000000002e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  28.41 
 
 
274 aa  110  2.0000000000000002e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0802  taurine ABC transporter, permease protein  29.49 
 
 
283 aa  108  9.000000000000001e-23  Burkholderia thailandensis E264  Bacteria  normal  0.207449  n/a   
 
 
-
 
NC_009712  Mboo_2012  binding-protein-dependent transport systems inner membrane component  28.45 
 
 
280 aa  107  1e-22  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.338733  normal  0.193625 
 
 
-
 
NC_013441  Gbro_3478  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
291 aa  107  2e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  0.466071  n/a   
 
 
-
 
NC_013159  Svir_18130  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.51 
 
 
283 aa  107  2e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0255  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
279 aa  105  6e-22  Pseudomonas putida GB-1  Bacteria  normal  0.796344  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  31.01 
 
 
252 aa  105  7e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
279 aa  104  1e-21  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_012880  Dd703_2644  binding-protein-dependent transport systems inner membrane component  35.18 
 
 
282 aa  103  2e-21  Dickeya dadantii Ech703  Bacteria  normal  0.285231  n/a   
 
 
-
 
NC_013595  Sros_1812  ABC transporter, permease protein  33.16 
 
 
257 aa  104  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.554956  normal  0.627316 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  27.8 
 
 
279 aa  103  4e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
267 aa  103  4e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_0403  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
256 aa  103  4e-21  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3875  binding-protein-dependent transport systems inner membrane component  28.76 
 
 
289 aa  103  4e-21  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1899  binding-protein-dependent transport systems inner membrane component  28.64 
 
 
275 aa  102  6e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  27.17 
 
 
280 aa  102  7e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  28.63 
 
 
250 aa  101  1e-20  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_012560  Avin_44530  Binding-protein-dependent transport systems inner membrane component  33.33 
 
 
259 aa  101  1e-20  Azotobacter vinelandii DJ  Bacteria  normal  0.0634098  n/a   
 
 
-
 
NC_007778  RPB_4060  binding-protein dependent transport system inner membrane protein  29.34 
 
 
256 aa  100  2e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2559  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
283 aa  100  2e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2304  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
278 aa  100  3e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.37818 
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  26.52 
 
 
255 aa  100  3e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_014150  Bmur_2553  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
275 aa  100  3e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2968  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
289 aa  100  3e-20  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0761961  normal 
 
 
-
 
NC_009668  Oant_3505  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
275 aa  100  3e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.197989  n/a   
 
 
-
 
NC_006349  BMAA1580  taurine ABC transporter, permease protein  28.38 
 
 
253 aa  99.8  4e-20  Burkholderia mallei ATCC 23344  Bacteria  normal  0.477521  n/a   
 
 
-
 
NC_013739  Cwoe_3818  binding-protein-dependent transport systems inner membrane component  27.94 
 
 
280 aa  99.8  4e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.615395  normal  0.42897 
 
 
-
 
NC_009079  BMA10247_A0697  taurine ABC transporter, permease protein  28.38 
 
 
283 aa  99.8  4e-20  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_2019  taurine ABC transporter, permease protein  28.38 
 
 
285 aa  99.8  4e-20  Burkholderia mallei NCTC 10229  Bacteria  normal  0.484134  n/a   
 
 
-
 
NC_009075  BURPS668_A2220  taurine ABC transporter, permease protein  28.38 
 
 
283 aa  99.8  4e-20  Burkholderia pseudomallei 668  Bacteria  normal  0.215273  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0620  permease component of taurine ABC transporter  28.38 
 
 
253 aa  99.4  5e-20  Burkholderia pseudomallei 1710b  Bacteria  decreased coverage  0.00192231  n/a   
 
 
-
 
NC_010625  Bphy_6082  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
296 aa  99.4  5e-20  Burkholderia phymatum STM815  Bacteria  normal  normal  0.201741 
 
 
-
 
NC_009078  BURPS1106A_A2133  taurine ABC transporter, permease protein  28.38 
 
 
283 aa  99.4  5e-20  Burkholderia pseudomallei 1106a  Bacteria  normal  0.186654  n/a   
 
 
-
 
NC_013093  Amir_5422  binding-protein-dependent transport systems inner membrane component  28.02 
 
 
269 aa  99  6e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1575  binding-protein-dependent transport systems inner membrane component  25.54 
 
 
266 aa  98.6  9e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0049  ABC taurine transporter, binding protein inner membrane component  29.63 
 
 
330 aa  98.2  1e-19  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0656508 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
254 aa  98.2  1e-19  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  28.4 
 
 
259 aa  97.8  1e-19  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_010551  BamMC406_1485  binding-protein-dependent transport systems inner membrane component  28.81 
 
 
270 aa  97.4  2e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1083  binding-protein-dependent transport systems inner membrane component  28.8 
 
 
270 aa  97.1  2e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1563  binding-protein-dependent transport systems inner membrane component  28.8 
 
 
270 aa  97.1  2e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1539  binding-protein-dependent transport systems inner membrane component  28.92 
 
 
270 aa  97.4  2e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0890555  normal 
 
 
-
 
NC_011891  A2cp1_3891  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
269 aa  96.7  3e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1171  taurine ABC transporter permease  26.87 
 
 
272 aa  96.7  3e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  0.104716  n/a   
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
256 aa  97.1  3e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5517  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
256 aa  97.1  3e-19  Variovorax paradoxus S110  Bacteria  normal  0.16627  n/a   
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  28.51 
 
 
271 aa  96.3  4e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_007347  Reut_A2719  binding-protein dependent transport system inner membrane protein  30.51 
 
 
284 aa  96.3  4e-19  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  29.46 
 
 
260 aa  96.3  4e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_013517  Sterm_0483  binding-protein-dependent transport systems inner membrane component  28.69 
 
 
275 aa  96.7  4e-19  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1464  binding-protein-dependent transport systems inner membrane component  28.69 
 
 
270 aa  96.3  4e-19  Burkholderia ambifaria AMMD  Bacteria  normal  0.0183453  n/a   
 
 
-
 
NC_011894  Mnod_0326  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
257 aa  96.3  5e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.369486  n/a   
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  27.82 
 
 
273 aa  95.9  5e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  27.82 
 
 
273 aa  95.9  5e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0047  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
306 aa  95.9  5e-19  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_4334  binding-protein-dependent transport systems inner membrane component  27.57 
 
 
536 aa  95.5  7e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0749  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
266 aa  95.5  7e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.534527 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
277 aa  95.5  7e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_013889  TK90_0966  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
279 aa  95.5  7e-19  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.136509 
 
 
-
 
NC_011830  Dhaf_3643  binding-protein-dependent transport systems inner membrane component  27.2 
 
 
252 aa  95.5  7e-19  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000799696  n/a   
 
 
-
 
NC_012917  PC1_1402  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
257 aa  95.5  8e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4705  nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein  28.92 
 
 
270 aa  95.5  8e-19  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_4564  taurine transporter subunit  27.16 
 
 
279 aa  95.5  8e-19  Serratia proteamaculans 568  Bacteria  normal  normal  0.746145 
 
 
-
 
NC_007760  Adeh_3750  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  28.24 
 
 
269 aa  95.5  8e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3807  binding-protein-dependent transport systems inner membrane component  28.24 
 
 
269 aa  95.5  8e-19  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1800  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
257 aa  95.1  9e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2276  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
257 aa  94.7  1e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal  0.0991744 
 
 
-
 
NC_012791  Vapar_0102  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
263 aa  95.1  1e-18  Variovorax paradoxus S110  Bacteria  normal  0.922239  n/a   
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  29.06 
 
 
263 aa  95.1  1e-18  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
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