More than 300 homologs were found in PanDaTox collection
for query gene Vapar_0267 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_0267  binding-protein-dependent transport systems inner membrane component  100 
 
 
276 aa  541  1e-153  Variovorax paradoxus S110  Bacteria  normal  0.0872978  n/a   
 
 
-
 
NC_008786  Veis_0834  binding-protein-dependent transport systems inner membrane component  82.13 
 
 
264 aa  424  1e-118  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3747  binding-protein-dependent transport systems inner membrane component  66.8 
 
 
254 aa  349  3e-95  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1186  binding-protein-dependent transport systems inner membrane component  62.86 
 
 
257 aa  305  5.0000000000000004e-82  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.409709  n/a   
 
 
-
 
NC_011004  Rpal_3864  binding-protein-dependent transport systems inner membrane component  54.36 
 
 
261 aa  234  1.0000000000000001e-60  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0933  binding-protein dependent transport system inner membrane protein  53.94 
 
 
261 aa  233  4.0000000000000004e-60  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3781  binding-protein-dependent transport systems inner membrane component  60 
 
 
177 aa  222  4e-57  Methylobacterium populi BJ001  Bacteria  normal  0.19201  normal  0.101834 
 
 
-
 
NC_009620  Smed_4214  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
281 aa  131  1.0000000000000001e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2719  binding-protein dependent transport system inner membrane protein  36.32 
 
 
284 aa  127  3e-28  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_2012  binding-protein-dependent transport systems inner membrane component  32.19 
 
 
280 aa  125  5e-28  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.338733  normal  0.193625 
 
 
-
 
NC_010510  Mrad2831_6162  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
262 aa  125  6e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.577279 
 
 
-
 
NC_008688  Pden_5126  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
280 aa  123  3e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1369  ABC transporter membrane protein  31.36 
 
 
272 aa  123  4e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0458182 
 
 
-
 
NC_008752  Aave_2968  binding-protein-dependent transport systems inner membrane component  34.82 
 
 
289 aa  122  8e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0761961  normal 
 
 
-
 
NC_013159  Svir_34320  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.25 
 
 
273 aa  121  9.999999999999999e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  30.77 
 
 
252 aa  120  1.9999999999999998e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_008709  Ping_0049  ABC taurine transporter, binding protein inner membrane component  30.28 
 
 
330 aa  121  1.9999999999999998e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0656508 
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
278 aa  120  3e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_013595  Sros_1812  ABC transporter, permease protein  35.56 
 
 
257 aa  119  3.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.554956  normal  0.627316 
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  29.21 
 
 
290 aa  117  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1818  ABC transporter, permease protein  30.86 
 
 
263 aa  118  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.493092 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
273 aa  118  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
273 aa  118  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_010002  Daci_0146  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
296 aa  117  1.9999999999999998e-25  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.159688 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
254 aa  117  1.9999999999999998e-25  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_012854  Rleg_6387  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
283 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.199649  normal  0.0607956 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
264 aa  117  3e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
273 aa  117  3e-25  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
255 aa  116  5e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_007973  Rmet_2858  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
291 aa  116  5e-25  Cupriavidus metallidurans CH34  Bacteria  normal  0.582448  normal 
 
 
-
 
NC_007333  Tfu_1692  putative ABC transporter membrane protein  30.08 
 
 
281 aa  115  7.999999999999999e-25  Thermobifida fusca YX  Bacteria  hitchhiker  0.00465779  n/a   
 
 
-
 
NC_013739  Cwoe_3818  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
280 aa  114  1.0000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.615395  normal  0.42897 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
256 aa  114  2.0000000000000002e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2304  binding-protein-dependent transport systems inner membrane component  27.89 
 
 
278 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.37818 
 
 
-
 
NC_011368  Rleg2_4541  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
283 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.193679 
 
 
-
 
NC_009632  SaurJH1_0164  binding-protein-dependent transport systems inner membrane component  28.81 
 
 
253 aa  114  2.0000000000000002e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0159  binding-protein-dependent transport systems inner membrane component  28.81 
 
 
253 aa  114  2.0000000000000002e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1145  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
279 aa  114  2.0000000000000002e-24  Methanosphaerula palustris E1-9c  Archaea  normal  0.208956  normal 
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
264 aa  114  2.0000000000000002e-24  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
264 aa  113  3e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  29.51 
 
 
263 aa  113  4.0000000000000004e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1210  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
315 aa  113  4.0000000000000004e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3875  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
289 aa  112  5e-24  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3035  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
298 aa  112  5e-24  Arthrobacter sp. FB24  Bacteria  normal  0.30367  n/a   
 
 
-
 
NC_008786  Veis_3788  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
276 aa  112  6e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.374556  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
273 aa  112  9e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_014211  Ndas_4937  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
287 aa  112  9e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0773955  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  33.33 
 
 
279 aa  111  1.0000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0483  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
275 aa  110  2.0000000000000002e-23  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0102  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
263 aa  110  2.0000000000000002e-23  Variovorax paradoxus S110  Bacteria  normal  0.922239  n/a   
 
 
-
 
NC_009428  Rsph17025_0749  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
266 aa  110  3e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.534527 
 
 
-
 
NC_011004  Rpal_2882  binding-protein-dependent transport systems inner membrane component  28.69 
 
 
268 aa  110  4.0000000000000004e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.80309  n/a   
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
265 aa  108  8.000000000000001e-23  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_010511  M446_2276  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
257 aa  108  9.000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal  0.0991744 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
265 aa  108  1e-22  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_011894  Mnod_0326  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
257 aa  108  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.369486  n/a   
 
 
-
 
NC_013093  Amir_5422  binding-protein-dependent transport systems inner membrane component  31.17 
 
 
269 aa  108  1e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
265 aa  108  1e-22  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  30.43 
 
 
272 aa  107  1e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  29.39 
 
 
264 aa  107  2e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1485  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
270 aa  107  2e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
264 aa  107  2e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0761  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
412 aa  107  2e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0058  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
275 aa  107  3e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_5423  binding-protein-dependent transport systems inner membrane component  29.88 
 
 
298 aa  106  3e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
265 aa  106  3e-22  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_009720  Xaut_3459  binding-protein-dependent transport systems inner membrane component  29.27 
 
 
283 aa  106  4e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  0.703735  normal 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  28.7 
 
 
263 aa  106  4e-22  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1464  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
270 aa  106  4e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.0183453  n/a   
 
 
-
 
NC_009972  Haur_2787  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
272 aa  106  5e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.334714  n/a   
 
 
-
 
NC_008786  Veis_3642  binding-protein-dependent transport systems inner membrane component  31.01 
 
 
275 aa  106  5e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.142025  normal 
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  29.1 
 
 
277 aa  105  6e-22  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  30.45 
 
 
250 aa  105  7e-22  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
258 aa  105  9e-22  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  25.91 
 
 
281 aa  104  1e-21  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_010508  Bcenmc03_1539  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
270 aa  105  1e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0890555  normal 
 
 
-
 
NC_008060  Bcen_1083  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
270 aa  105  1e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1563  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
270 aa  105  1e-21  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1763  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
282 aa  105  1e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0464  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
273 aa  105  1e-21  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  28.14 
 
 
263 aa  104  1e-21  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4705  nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein  28.63 
 
 
270 aa  103  2e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0765  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
265 aa  103  2e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0040  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
259 aa  103  2e-21  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.832577  normal  0.34867 
 
 
-
 
NC_008781  Pnap_2417  binding-protein-dependent transport systems inner membrane component  30.31 
 
 
300 aa  104  2e-21  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0833403  normal 
 
 
-
 
NC_013205  Aaci_2846  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
260 aa  103  2e-21  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000143494  n/a   
 
 
-
 
NC_012791  Vapar_0155  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
292 aa  104  2e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  28.98 
 
 
260 aa  103  3e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_008541  Arth_3082  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
280 aa  103  3e-21  Arthrobacter sp. FB24  Bacteria  normal  0.0593827  n/a   
 
 
-
 
NC_008752  Aave_0047  binding-protein-dependent transport systems inner membrane component  30.33 
 
 
306 aa  103  3e-21  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
277 aa  103  4e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_007951  Bxe_A2492  ABC aliphatic sulfonates transporter, innermembrane subunit  28.04 
 
 
280 aa  103  4e-21  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.773133 
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  29.15 
 
 
262 aa  103  4e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  30.18 
 
 
267 aa  103  4e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0386  binding-protein-dependent transport systems inner membrane component  30.49 
 
 
266 aa  102  5e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.314921 
 
 
-
 
NC_010678  Rpic_4037  binding-protein-dependent transport systems inner membrane component  29.12 
 
 
276 aa  102  6e-21  Ralstonia pickettii 12J  Bacteria  normal  0.960786  normal 
 
 
-
 
NC_012857  Rpic12D_4149  binding-protein-dependent transport systems inner membrane component  29.12 
 
 
276 aa  102  6e-21  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1470  binding-protein dependent transport system inner membrane protein  28.4 
 
 
301 aa  102  7e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1429  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
257 aa  102  9e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.214609  n/a   
 
 
-
 
NC_011666  Msil_0772  binding-protein-dependent transport systems inner membrane component  28.89 
 
 
302 aa  102  1e-20  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0528102 
 
 
-
 
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