109 homologs were found in PanDaTox collection
for query gene Pnuc_0636 on replicon NC_009379
Organism: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009379  Pnuc_0636  cyclic nucleotide-binding protein  100 
 
 
205 aa  414  9.999999999999999e-116  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2799  cyclic nucleotide-binding domain-containing protein  64.18 
 
 
202 aa  278  3e-74  Polaromonas sp. JS666  Bacteria  normal  0.208629  normal  0.300768 
 
 
-
 
NC_012791  Vapar_4489  putative transcriptional regulator, Crp/Fnr family  62.69 
 
 
202 aa  254  5e-67  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  33.54 
 
 
187 aa  80.1  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  27.71 
 
 
200 aa  76.6  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  29.3 
 
 
184 aa  72  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_009441  Fjoh_3997  cyclic nucleotide-binding protein  27.5 
 
 
216 aa  67  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4579  putative transcriptional regulator, Crp/Fnr family  27.27 
 
 
195 aa  65.9  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.249739  normal 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  24.85 
 
 
191 aa  63.9  0.000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  28.11 
 
 
191 aa  62.8  0.000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_013037  Dfer_1771  putative transcriptional regulator, Crp/Fnr family  31.37 
 
 
188 aa  61.6  0.000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.207903 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  28.75 
 
 
192 aa  61.6  0.000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  22.84 
 
 
190 aa  60.5  0.00000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  24.07 
 
 
190 aa  60.5  0.00000002  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  25.45 
 
 
189 aa  59.3  0.00000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  23.46 
 
 
189 aa  58.9  0.00000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.87 
 
 
236 aa  58.2  0.00000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  26.51 
 
 
194 aa  58.2  0.00000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_004347  SO_1586  hypothetical protein  29.67 
 
 
200 aa  57.8  0.0000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  23.7 
 
 
193 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  23.83 
 
 
203 aa  56.2  0.0000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  24.86 
 
 
192 aa  56.6  0.0000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_0436  transcription regulator  27.51 
 
 
214 aa  55.1  0.0000007  Campylobacter curvus 525.92  Bacteria  normal  0.0316636  n/a   
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  27.85 
 
 
196 aa  55.1  0.0000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0259  putative transcriptional regulator, Crp/Fnr family  26.81 
 
 
179 aa  55.1  0.0000008  Spirosoma linguale DSM 74  Bacteria  normal  0.0493403  normal  0.0138145 
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  25.48 
 
 
202 aa  55.1  0.0000008  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  26.94 
 
 
192 aa  55.1  0.0000008  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  24.47 
 
 
228 aa  55.1  0.0000008  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  22.58 
 
 
188 aa  54.3  0.000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  27.61 
 
 
190 aa  54.3  0.000001  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_013132  Cpin_6187  putative transcriptional regulator, Crp/Fnr family  21.94 
 
 
191 aa  54.3  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.138548 
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  24.71 
 
 
213 aa  53.5  0.000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  24.55 
 
 
190 aa  53.1  0.000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  23.37 
 
 
192 aa  53.1  0.000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  25 
 
 
230 aa  52.8  0.000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  21.89 
 
 
191 aa  52.4  0.000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  33.78 
 
 
202 aa  52.4  0.000004  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  25.3 
 
 
219 aa  52.8  0.000004  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  28 
 
 
189 aa  52.8  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  30.77 
 
 
202 aa  52.4  0.000005  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  20.65 
 
 
209 aa  52  0.000006  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_013132  Cpin_2892  putative transcriptional regulator, Crp/Fnr family  25.3 
 
 
192 aa  52  0.000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  26.99 
 
 
192 aa  51.6  0.000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  25.15 
 
 
196 aa  51.2  0.00001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  25.13 
 
 
225 aa  51.2  0.00001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  26.55 
 
 
191 aa  50.8  0.00001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0484  putative transcriptional regulator, Crp/Fnr family  23.78 
 
 
189 aa  50.8  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.46296  normal 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  27.11 
 
 
198 aa  51.2  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  22.84 
 
 
196 aa  50.8  0.00001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  22.29 
 
 
189 aa  50.8  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  28.32 
 
 
194 aa  50.4  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  22.87 
 
 
224 aa  50.4  0.00002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  24.43 
 
 
202 aa  49.7  0.00003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  22.44 
 
 
201 aa  49.7  0.00003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  24.14 
 
 
199 aa  49.7  0.00003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  21.25 
 
 
196 aa  49.3  0.00004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  25.15 
 
 
191 aa  49.3  0.00004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_013132  Cpin_4313  putative transcriptional regulator, Crp/Fnr family  22.58 
 
 
189 aa  49.3  0.00004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.352776  normal  0.0805957 
 
 
-
 
NC_008599  CFF8240_0798  transcription regulator  24.73 
 
 
213 aa  48.9  0.00005  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.00000000000892201  n/a   
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  27.68 
 
 
212 aa  48.9  0.00005  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  25.28 
 
 
189 aa  48.9  0.00005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  23.03 
 
 
197 aa  48.9  0.00006  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009802  CCC13826_1550  protein YieJ  24.74 
 
 
212 aa  48.5  0.00007  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  24.75 
 
 
231 aa  48.5  0.00008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  24 
 
 
192 aa  48.1  0.00009  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_008048  Sala_3164  cyclic nucleotide-binding protein  28.24 
 
 
199 aa  47.8  0.0001  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_2066  Crp/FNR family transcriptional regulator  25.13 
 
 
224 aa  47.8  0.0001  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0111986  n/a   
 
 
-
 
NC_013132  Cpin_2716  putative transcriptional regulator, Crp/Fnr family  25.6 
 
 
189 aa  47.8  0.0001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  24.44 
 
 
192 aa  47.8  0.0001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  25.47 
 
 
189 aa  47  0.0002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  27.01 
 
 
222 aa  47  0.0002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  27.01 
 
 
222 aa  47  0.0002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  27.52 
 
 
243 aa  47.4  0.0002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  22.64 
 
 
186 aa  46.2  0.0003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  26.89 
 
 
237 aa  46.2  0.0003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  27.67 
 
 
224 aa  46.2  0.0004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  23.93 
 
 
196 aa  45.8  0.0004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_013132  Cpin_4565  putative transcriptional regulator, Crp/Fnr family  23.64 
 
 
197 aa  45.8  0.0004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.289048  normal  0.35844 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  20.37 
 
 
196 aa  45.8  0.0004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  23.81 
 
 
189 aa  45.4  0.0006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  22.29 
 
 
192 aa  45.4  0.0006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  27.22 
 
 
222 aa  44.7  0.0009  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  25.88 
 
 
200 aa  44.7  0.0009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  20.74 
 
 
224 aa  44.3  0.001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  24.57 
 
 
195 aa  44.3  0.001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  22.15 
 
 
189 aa  44.3  0.001  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  24.47 
 
 
233 aa  44.7  0.001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  23.32 
 
 
226 aa  44.3  0.001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  21.69 
 
 
223 aa  44.3  0.001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  25.41 
 
 
234 aa  44.3  0.001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  20.69 
 
 
194 aa  44.7  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  22.45 
 
 
193 aa  43.9  0.002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  25.32 
 
 
168 aa  43.9  0.002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  21.47 
 
 
190 aa  43.9  0.002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  25.26 
 
 
227 aa  43.9  0.002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  23.78 
 
 
197 aa  43.9  0.002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  22.58 
 
 
195 aa  43.5  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  20.13 
 
 
197 aa  43.5  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  22.16 
 
 
189 aa  42.7  0.003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  19.44 
 
 
194 aa  42.7  0.004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
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