109 homologs were found in PanDaTox collection
for query gene Ssed_3250 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  100 
 
 
190 aa  389  1e-107  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  61.05 
 
 
192 aa  225  2e-58  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  52.25 
 
 
202 aa  182  4.0000000000000006e-45  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  51.69 
 
 
202 aa  180  1e-44  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  50.56 
 
 
202 aa  176  2e-43  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  48.31 
 
 
203 aa  172  2.9999999999999996e-42  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  51.16 
 
 
192 aa  169  3e-41  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_004347  SO_1586  hypothetical protein  47.19 
 
 
200 aa  163  1.0000000000000001e-39  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  29.95 
 
 
190 aa  107  2e-22  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  35.8 
 
 
189 aa  104  7e-22  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  29.41 
 
 
190 aa  93.2  2e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  35.22 
 
 
192 aa  92.4  3e-18  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  32.16 
 
 
198 aa  72  0.000000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  29.65 
 
 
196 aa  67.8  0.00000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  30.99 
 
 
192 aa  67  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  32.47 
 
 
191 aa  67.8  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  25.52 
 
 
196 aa  65.9  0.0000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  28.12 
 
 
189 aa  65.9  0.0000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  25.77 
 
 
194 aa  65.5  0.0000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2731  cyclic nucleotide-binding domain-containing protein  25.26 
 
 
192 aa  64.7  0.0000000007  Colwellia psychrerythraea 34H  Bacteria  normal  0.19887  n/a   
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  28.02 
 
 
185 aa  64.3  0.0000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  30.28 
 
 
190 aa  63.9  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  26.92 
 
 
190 aa  63.5  0.000000002  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  29.19 
 
 
175 aa  62.8  0.000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  33.57 
 
 
208 aa  62.4  0.000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  29.19 
 
 
196 aa  62.4  0.000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  27.11 
 
 
208 aa  60.8  0.00000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  22.99 
 
 
194 aa  60.1  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  30.77 
 
 
201 aa  59.3  0.00000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  25.93 
 
 
189 aa  59.7  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  25.27 
 
 
194 aa  58.2  0.00000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  25.83 
 
 
196 aa  58.2  0.00000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  26.43 
 
 
189 aa  58.2  0.00000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  26.35 
 
 
175 aa  57.8  0.00000008  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  26.11 
 
 
202 aa  57  0.0000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  29.07 
 
 
199 aa  57.4  0.0000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  30.95 
 
 
194 aa  57.4  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  28.12 
 
 
168 aa  56.6  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  30.61 
 
 
203 aa  56.6  0.0000002  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  28.37 
 
 
195 aa  56.6  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  25.81 
 
 
192 aa  55.5  0.0000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  24.86 
 
 
189 aa  55.5  0.0000005  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  28.92 
 
 
196 aa  55.1  0.0000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6187  putative transcriptional regulator, Crp/Fnr family  28.05 
 
 
191 aa  55.1  0.0000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.138548 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  25.41 
 
 
191 aa  54.3  0.0000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0636  cyclic nucleotide-binding protein  27.61 
 
 
205 aa  54.3  0.000001  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  24.23 
 
 
198 aa  53.5  0.000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  25 
 
 
188 aa  53.1  0.000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  24.14 
 
 
189 aa  53.1  0.000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  26.43 
 
 
201 aa  53.5  0.000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  25.16 
 
 
197 aa  52.8  0.000003  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  28.47 
 
 
195 aa  52.8  0.000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  26.67 
 
 
194 aa  52  0.000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  25.3 
 
 
194 aa  52  0.000006  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  25.9 
 
 
191 aa  51.6  0.000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2799  cyclic nucleotide-binding domain-containing protein  28.31 
 
 
202 aa  51.2  0.000008  Polaromonas sp. JS666  Bacteria  normal  0.208629  normal  0.300768 
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  24.46 
 
 
195 aa  51.2  0.000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  26.86 
 
 
189 aa  50.8  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  23.28 
 
 
189 aa  50.8  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  24.12 
 
 
189 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  22.58 
 
 
192 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  28.77 
 
 
227 aa  49.7  0.00003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  27.27 
 
 
190 aa  48.9  0.00004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1779  cyclic nucleotide-binding  26.28 
 
 
192 aa  49.3  0.00004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.705859  normal  0.0224927 
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  27.59 
 
 
189 aa  49.3  0.00004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  27.97 
 
 
190 aa  48.9  0.00005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  26.9 
 
 
189 aa  48.9  0.00005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  24.49 
 
 
189 aa  48.5  0.00006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3997  cyclic nucleotide-binding protein  23.03 
 
 
216 aa  48.1  0.00007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  22.7 
 
 
193 aa  47.8  0.00009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  25 
 
 
191 aa  47.8  0.0001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  23.81 
 
 
192 aa  47.8  0.0001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_3164  cyclic nucleotide-binding protein  26.45 
 
 
199 aa  47  0.0002  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  21.15 
 
 
208 aa  46.6  0.0002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  21.28 
 
 
191 aa  47  0.0002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  23.78 
 
 
198 aa  46.6  0.0002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  26.92 
 
 
193 aa  45.8  0.0003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  20.53 
 
 
190 aa  46.2  0.0003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  24.39 
 
 
193 aa  46.2  0.0003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  24.62 
 
 
188 aa  45.8  0.0003  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  21.23 
 
 
194 aa  46.2  0.0003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  25.77 
 
 
194 aa  45.8  0.0004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  23.63 
 
 
187 aa  45.4  0.0005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  24.46 
 
 
194 aa  45.4  0.0005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  30.99 
 
 
197 aa  45.4  0.0005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  24.71 
 
 
192 aa  45.4  0.0005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  24.05 
 
 
192 aa  45.4  0.0005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013162  Coch_0935  cyclic nucleotide-binding protein  28.74 
 
 
166 aa  45.4  0.0005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0225021  n/a   
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  26.47 
 
 
187 aa  44.7  0.0009  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  26.17 
 
 
185 aa  44.3  0.001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  19.89 
 
 
191 aa  44.7  0.001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_008255  CHU_2540  cyclic nucleotide binding regulatory protein  23.56 
 
 
211 aa  44.3  0.001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.90473  normal 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  22.29 
 
 
187 aa  43.9  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  26.9 
 
 
208 aa  43.9  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  29.71 
 
 
191 aa  44.3  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  25.71 
 
 
191 aa  44.3  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  20.51 
 
 
194 aa  42.7  0.003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_013730  Slin_3811  putative transcriptional regulator, Crp/Fnr family  23.57 
 
 
197 aa  43.1  0.003  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000424925  normal  0.837205 
 
 
-
 
NC_013061  Phep_2769  cyclic nucleotide-binding  24.82 
 
 
192 aa  42.4  0.004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.311339  normal 
 
 
-
 
NC_012791  Vapar_4489  putative transcriptional regulator, Crp/Fnr family  24.86 
 
 
202 aa  42  0.005  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>