242 homologs were found in PanDaTox collection
for query gene Cpin_5018 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  100 
 
 
194 aa  403  1.0000000000000001e-112  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  53.65 
 
 
192 aa  225  4e-58  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  41.3 
 
 
195 aa  171  5e-42  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  44.81 
 
 
197 aa  170  1e-41  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  42.19 
 
 
192 aa  166  2e-40  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  43.72 
 
 
200 aa  160  7e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  40.44 
 
 
194 aa  158  5e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  39.67 
 
 
191 aa  158  5e-38  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  41.8 
 
 
189 aa  157  8e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  38.2 
 
 
191 aa  156  2e-37  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  39.11 
 
 
189 aa  155  4e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  38.25 
 
 
194 aa  155  5.0000000000000005e-37  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  39.34 
 
 
195 aa  154  7e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  38.02 
 
 
192 aa  153  1e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  38.5 
 
 
190 aa  150  1e-35  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  36.98 
 
 
192 aa  146  2.0000000000000003e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2892  putative transcriptional regulator, Crp/Fnr family  36.98 
 
 
192 aa  144  1e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  37.43 
 
 
194 aa  141  7e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_013132  Cpin_4565  putative transcriptional regulator, Crp/Fnr family  36 
 
 
197 aa  137  1e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.289048  normal  0.35844 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  37.63 
 
 
189 aa  136  2e-31  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  37.63 
 
 
197 aa  135  5e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  34.05 
 
 
196 aa  134  8e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  40.13 
 
 
193 aa  132  3e-30  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  35.91 
 
 
213 aa  131  6.999999999999999e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  37.37 
 
 
194 aa  130  9e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_013132  Cpin_1758  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
199 aa  128  6e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.972019  normal 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
187 aa  125  5e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3811  putative transcriptional regulator, Crp/Fnr family  34.98 
 
 
197 aa  122  4e-27  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000424925  normal  0.837205 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  32.26 
 
 
192 aa  120  9e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  34.2 
 
 
189 aa  119  3e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2686  putative transcriptional regulator, Crp/Fnr family  36.26 
 
 
195 aa  119  3e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  30.6 
 
 
193 aa  118  6e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  35.36 
 
 
200 aa  116  1.9999999999999998e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  33.52 
 
 
184 aa  115  3e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  36.26 
 
 
194 aa  113  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  34.68 
 
 
193 aa  112  5e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  32.97 
 
 
185 aa  109  2.0000000000000002e-23  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  34.22 
 
 
198 aa  108  5e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  34.29 
 
 
192 aa  106  2e-22  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  27.81 
 
 
189 aa  106  2e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  31.11 
 
 
196 aa  106  2e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  31.44 
 
 
204 aa  106  2e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  28.88 
 
 
208 aa  105  3e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  29.73 
 
 
189 aa  106  3e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  33.73 
 
 
194 aa  105  3e-22  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  32.78 
 
 
196 aa  105  6e-22  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  31.61 
 
 
198 aa  105  6e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  31.46 
 
 
196 aa  104  7e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  28.57 
 
 
190 aa  103  2e-21  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  30.39 
 
 
185 aa  102  3e-21  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_009441  Fjoh_3997  cyclic nucleotide-binding protein  26.63 
 
 
216 aa  102  3e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  28.19 
 
 
189 aa  102  3e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  29.83 
 
 
190 aa  102  5e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  29.83 
 
 
190 aa  102  5e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  28.57 
 
 
201 aa  101  6e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  30.06 
 
 
192 aa  99  3e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  31.33 
 
 
193 aa  99.4  3e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  31.35 
 
 
196 aa  99  4e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  27.22 
 
 
191 aa  98.6  5e-20  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  30.69 
 
 
197 aa  98.2  7e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  31.95 
 
 
201 aa  96.7  2e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  32.35 
 
 
188 aa  95.1  5e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  30.81 
 
 
192 aa  93.6  1e-18  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  29.89 
 
 
186 aa  93.6  1e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2093  putative transcriptional regulator, Crp/Fnr family  31.89 
 
 
198 aa  94  1e-18  Spirosoma linguale DSM 74  Bacteria  normal  0.177732  normal  0.144661 
 
 
-
 
NC_013037  Dfer_1771  putative transcriptional regulator, Crp/Fnr family  29.26 
 
 
188 aa  93.6  2e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.207903 
 
 
-
 
NC_013132  Cpin_4579  putative transcriptional regulator, Crp/Fnr family  25.42 
 
 
195 aa  92.4  4e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.249739  normal 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  32.11 
 
 
191 aa  92.4  4e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  28.49 
 
 
208 aa  92.4  4e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  31.15 
 
 
187 aa  90.5  1e-17  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  29.83 
 
 
202 aa  90.5  1e-17  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  28.21 
 
 
189 aa  90.9  1e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  29.44 
 
 
194 aa  90.1  2e-17  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  31.71 
 
 
195 aa  90.1  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  28.96 
 
 
227 aa  88.6  5e-17  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  32.92 
 
 
194 aa  88.2  6e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  30.53 
 
 
194 aa  87.8  8e-17  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  32.04 
 
 
191 aa  86.3  2e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  27.87 
 
 
187 aa  86.7  2e-16  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  28.49 
 
 
191 aa  87  2e-16  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_013037  Dfer_1119  putative transcriptional regulator, Crp/Fnr family  25.27 
 
 
200 aa  86.7  2e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.301792  normal  0.283785 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  26.23 
 
 
188 aa  85.9  4e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  29.1 
 
 
199 aa  85.1  6e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  25.15 
 
 
191 aa  84.7  8e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  31.95 
 
 
191 aa  82.8  0.000000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_013730  Slin_2881  putative transcriptional regulator, Crp/Fnr family  25.71 
 
 
187 aa  82.8  0.000000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  22.04 
 
 
194 aa  82.8  0.000000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2871  putative transcriptional regulator, Crp/Fnr family  31.91 
 
 
193 aa  82.4  0.000000000000004  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00453056  normal  0.032413 
 
 
-
 
NC_013061  Phep_3758  cyclic nucleotide-binding  28.02 
 
 
199 aa  80.9  0.00000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  30.77 
 
 
175 aa  79.3  0.00000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  23.08 
 
 
189 aa  79.3  0.00000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2716  putative transcriptional regulator, Crp/Fnr family  25.44 
 
 
189 aa  79.7  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  28.34 
 
 
189 aa  79.7  0.00000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  27.87 
 
 
190 aa  77  0.0000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_013132  Cpin_3057  putative transcriptional regulator, Crp/Fnr family  28.65 
 
 
186 aa  75.1  0.0000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  30.12 
 
 
205 aa  74.3  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  26.09 
 
 
189 aa  74.3  0.000000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013037  Dfer_0889  putative transcriptional regulator, Crp/Fnr family  32.16 
 
 
217 aa  73.9  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00205469  normal  0.913069 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  23.66 
 
 
196 aa  73.6  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  26.92 
 
 
208 aa  72.8  0.000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>