152 homologs were found in PanDaTox collection
for query gene Dfer_1771 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_1771  putative transcriptional regulator, Crp/Fnr family  100 
 
 
188 aa  392  1e-108  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.207903 
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  59.57 
 
 
200 aa  249  2e-65  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  60 
 
 
184 aa  234  6e-61  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  44.68 
 
 
187 aa  165  4e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4579  putative transcriptional regulator, Crp/Fnr family  41.21 
 
 
195 aa  155  4e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.249739  normal 
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  39.78 
 
 
189 aa  151  5e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3997  cyclic nucleotide-binding protein  42.39 
 
 
216 aa  150  1e-35  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  38.83 
 
 
193 aa  139  3e-32  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  35.52 
 
 
194 aa  126  2.0000000000000002e-28  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  30.11 
 
 
192 aa  123  2e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  33.88 
 
 
194 aa  115  3.9999999999999997e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  30.11 
 
 
192 aa  114  6e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2892  putative transcriptional regulator, Crp/Fnr family  34.88 
 
 
192 aa  112  3e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  33.68 
 
 
192 aa  112  3e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  33.16 
 
 
196 aa  112  4.0000000000000004e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  33.7 
 
 
195 aa  110  1.0000000000000001e-23  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  31.52 
 
 
197 aa  106  2e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  32.26 
 
 
213 aa  105  3e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_013730  Slin_3811  putative transcriptional regulator, Crp/Fnr family  30.98 
 
 
197 aa  103  1e-21  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000424925  normal  0.837205 
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  29.26 
 
 
194 aa  102  2e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  31.18 
 
 
190 aa  102  3e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1758  putative transcriptional regulator, Crp/Fnr family  32.43 
 
 
199 aa  102  4e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.972019  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  31.72 
 
 
191 aa  101  5e-21  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  32.95 
 
 
193 aa  102  5e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  29.03 
 
 
200 aa  101  6e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  27.78 
 
 
192 aa  99.8  2e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_013132  Cpin_4565  putative transcriptional regulator, Crp/Fnr family  33.15 
 
 
197 aa  99.8  2e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.289048  normal  0.35844 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  29.65 
 
 
192 aa  97.8  9e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  26.88 
 
 
196 aa  97.8  9e-20  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  30.77 
 
 
195 aa  97.4  1e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  29.03 
 
 
192 aa  97.4  1e-19  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  30.11 
 
 
189 aa  96.7  2e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  27.47 
 
 
191 aa  95.9  3e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  29.89 
 
 
189 aa  94.7  8e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  28.07 
 
 
197 aa  93.2  2e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  29.83 
 
 
194 aa  92  5e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  25.93 
 
 
189 aa  87.4  1e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  26.49 
 
 
189 aa  86.3  2e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  27.22 
 
 
191 aa  80.5  0.00000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  27.81 
 
 
196 aa  80.9  0.00000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_012791  Vapar_4489  putative transcriptional regulator, Crp/Fnr family  30.11 
 
 
202 aa  80.5  0.00000000000001  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
NC_013132  Cpin_2686  putative transcriptional regulator, Crp/Fnr family  28.11 
 
 
195 aa  80.5  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  26.6 
 
 
189 aa  79  0.00000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  31.05 
 
 
198 aa  78.6  0.00000000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  25.81 
 
 
190 aa  77.4  0.0000000000001  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  26.37 
 
 
208 aa  75.9  0.0000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  27.04 
 
 
194 aa  74.3  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  25.54 
 
 
197 aa  73.2  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  26.09 
 
 
208 aa  73.6  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  27.22 
 
 
189 aa  72.8  0.000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  22.34 
 
 
193 aa  72.4  0.000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  25.7 
 
 
196 aa  71.6  0.000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  27.66 
 
 
196 aa  70.9  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2799  cyclic nucleotide-binding domain-containing protein  30.06 
 
 
202 aa  70.9  0.00000000001  Polaromonas sp. JS666  Bacteria  normal  0.208629  normal  0.300768 
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  25.26 
 
 
204 aa  69.3  0.00000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  26.4 
 
 
194 aa  69.3  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_009379  Pnuc_0636  cyclic nucleotide-binding protein  30.41 
 
 
205 aa  68.2  0.00000000007  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  22.65 
 
 
190 aa  68.2  0.00000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  23.66 
 
 
191 aa  67.4  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  24.84 
 
 
175 aa  66.6  0.0000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  24.71 
 
 
195 aa  66.6  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  21.35 
 
 
190 aa  64.7  0.0000000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  23.86 
 
 
202 aa  64.7  0.0000000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  24.59 
 
 
198 aa  64.7  0.0000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  25 
 
 
189 aa  63.2  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  22.16 
 
 
201 aa  62.4  0.000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013132  Cpin_2716  putative transcriptional regulator, Crp/Fnr family  24.26 
 
 
189 aa  62.4  0.000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  27.23 
 
 
192 aa  62  0.000000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  24.84 
 
 
192 aa  62  0.000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  26.56 
 
 
199 aa  61.6  0.000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  28.66 
 
 
197 aa  60.5  0.00000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  21.91 
 
 
193 aa  60.5  0.00000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  28.93 
 
 
190 aa  59.7  0.00000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  25.73 
 
 
188 aa  60.5  0.00000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1779  cyclic nucleotide-binding  27.22 
 
 
192 aa  60.1  0.00000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.705859  normal  0.0224927 
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  24.34 
 
 
194 aa  59.3  0.00000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2769  cyclic nucleotide-binding  27.85 
 
 
192 aa  58.9  0.00000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.311339  normal 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  26.58 
 
 
191 aa  58.9  0.00000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  26.67 
 
 
185 aa  58.5  0.00000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  23.66 
 
 
196 aa  58.5  0.00000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  20.97 
 
 
189 aa  58.5  0.00000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_003910  CPS_2731  cyclic nucleotide-binding domain-containing protein  26.23 
 
 
192 aa  58.2  0.00000007  Colwellia psychrerythraea 34H  Bacteria  normal  0.19887  n/a   
 
 
-
 
NC_013730  Slin_2093  putative transcriptional regulator, Crp/Fnr family  21.86 
 
 
198 aa  57.8  0.00000009  Spirosoma linguale DSM 74  Bacteria  normal  0.177732  normal  0.144661 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  22.67 
 
 
175 aa  57.4  0.0000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  25.97 
 
 
191 aa  57.4  0.0000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  24.29 
 
 
186 aa  57  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  23.91 
 
 
201 aa  56.6  0.0000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_013132  Cpin_6710  putative transcriptional regulator, Crp/Fnr family  24.68 
 
 
189 aa  55.8  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  26.45 
 
 
194 aa  55.5  0.0000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  23.57 
 
 
190 aa  54.7  0.0000007  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  26.11 
 
 
192 aa  55.1  0.0000007  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  23.5 
 
 
208 aa  54.7  0.0000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  22.93 
 
 
187 aa  54.7  0.0000009  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  21.91 
 
 
185 aa  54.3  0.000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  25.81 
 
 
189 aa  54.3  0.000001  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_013037  Dfer_0484  putative transcriptional regulator, Crp/Fnr family  25 
 
 
189 aa  54.3  0.000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.46296  normal 
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  25.26 
 
 
205 aa  53.5  0.000002  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  21.93 
 
 
194 aa  53.5  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  22.99 
 
 
194 aa  53.1  0.000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  22.29 
 
 
227 aa  52.8  0.000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
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