157 homologs were found in PanDaTox collection
for query gene Shew185_1388 on replicon NC_009665
Organism: Shewanella baltica OS185



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  100 
 
 
203 aa  412  1e-114  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1586  hypothetical protein  71.74 
 
 
200 aa  250  1e-65  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  72.83 
 
 
202 aa  245  3e-64  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  72.28 
 
 
202 aa  245  4e-64  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  71.35 
 
 
202 aa  243  1.9999999999999999e-63  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  48.31 
 
 
190 aa  186  3e-46  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  54.19 
 
 
192 aa  179  2e-44  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  53.71 
 
 
192 aa  169  2e-41  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  36.46 
 
 
190 aa  119  3e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  37.29 
 
 
192 aa  115  3.9999999999999997e-25  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  40.11 
 
 
189 aa  112  4.0000000000000004e-24  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  32.54 
 
 
190 aa  107  2e-22  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  33.13 
 
 
199 aa  79.3  0.00000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  30.86 
 
 
201 aa  77  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  31.93 
 
 
196 aa  77  0.0000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  28.74 
 
 
194 aa  76.6  0.0000000000002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  31.41 
 
 
187 aa  76.3  0.0000000000003  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  24.28 
 
 
191 aa  71.6  0.000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  29.88 
 
 
196 aa  70.9  0.00000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  28.48 
 
 
189 aa  69.7  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  31.41 
 
 
190 aa  68.9  0.00000000004  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  30.12 
 
 
192 aa  68.2  0.00000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  29.27 
 
 
196 aa  68.2  0.00000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  32.48 
 
 
191 aa  68.2  0.00000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  23.84 
 
 
194 aa  67.4  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  24.14 
 
 
190 aa  67  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  31.1 
 
 
198 aa  67.4  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  21.93 
 
 
188 aa  66.2  0.0000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_003910  CPS_2731  cyclic nucleotide-binding domain-containing protein  25.28 
 
 
192 aa  65.9  0.0000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.19887  n/a   
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  27.67 
 
 
198 aa  65.9  0.0000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  24.71 
 
 
191 aa  65.9  0.0000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  30.34 
 
 
203 aa  65.9  0.0000000004  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  23.91 
 
 
198 aa  65.5  0.0000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  31.52 
 
 
196 aa  65.1  0.0000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  26.51 
 
 
208 aa  64.7  0.0000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  31.21 
 
 
205 aa  63.9  0.000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  28.67 
 
 
208 aa  63.9  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  26.38 
 
 
175 aa  64.3  0.000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  26.75 
 
 
190 aa  63.5  0.000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  26.97 
 
 
189 aa  63.2  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  28.05 
 
 
189 aa  62.8  0.000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  27.46 
 
 
227 aa  62.8  0.000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  28.75 
 
 
189 aa  62  0.000000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  25.54 
 
 
189 aa  62  0.000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  25.16 
 
 
175 aa  60.8  0.00000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  27.32 
 
 
189 aa  60.1  0.00000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  27.54 
 
 
195 aa  60.5  0.00000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  26.8 
 
 
192 aa  59.7  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  25.5 
 
 
194 aa  58.9  0.00000005  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  29.7 
 
 
191 aa  58.5  0.00000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  28.37 
 
 
191 aa  58.2  0.00000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  27.64 
 
 
204 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_009379  Pnuc_0636  cyclic nucleotide-binding protein  23.2 
 
 
205 aa  56.6  0.0000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  28.1 
 
 
201 aa  57  0.0000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  23.08 
 
 
190 aa  56.2  0.0000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  24.39 
 
 
194 aa  56.2  0.0000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  26.11 
 
 
202 aa  55.8  0.0000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  23.9 
 
 
197 aa  55.5  0.0000005  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  27.92 
 
 
191 aa  55.1  0.0000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_009441  Fjoh_3294  cyclic nucleotide-binding protein  27.5 
 
 
187 aa  55.1  0.0000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6187  putative transcriptional regulator, Crp/Fnr family  28.09 
 
 
191 aa  55.1  0.0000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.138548 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  23.2 
 
 
190 aa  54.7  0.0000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  21.16 
 
 
194 aa  54.7  0.0000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  28.67 
 
 
208 aa  53.9  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2799  cyclic nucleotide-binding domain-containing protein  25.48 
 
 
202 aa  54.3  0.000001  Polaromonas sp. JS666  Bacteria  normal  0.208629  normal  0.300768 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  26.75 
 
 
185 aa  54.3  0.000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  25.15 
 
 
191 aa  54.7  0.000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_013132  Cpin_6710  putative transcriptional regulator, Crp/Fnr family  24.73 
 
 
189 aa  54.3  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  24.71 
 
 
196 aa  53.1  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0532  cyclic nucleotide-binding protein  25 
 
 
189 aa  53.5  0.000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  23.89 
 
 
193 aa  53.5  0.000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  27.53 
 
 
193 aa  53.1  0.000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  23.6 
 
 
188 aa  52.8  0.000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  24 
 
 
188 aa  53.1  0.000003  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  22.86 
 
 
189 aa  52  0.000006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  27.13 
 
 
250 aa  51.6  0.000007  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  27.13 
 
 
250 aa  51.6  0.000007  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  27.13 
 
 
250 aa  51.6  0.000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  26.51 
 
 
184 aa  51.2  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  24.73 
 
 
189 aa  50.8  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  31.69 
 
 
197 aa  50.8  0.00001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  23.17 
 
 
196 aa  51.2  0.00001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  25.17 
 
 
192 aa  50.8  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  23.83 
 
 
200 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_013132  Cpin_2716  putative transcriptional regulator, Crp/Fnr family  24.38 
 
 
189 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2540  cyclic nucleotide binding regulatory protein  26.83 
 
 
211 aa  50.4  0.00002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.90473  normal 
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  25.64 
 
 
194 aa  50.4  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  26.2 
 
 
250 aa  50.1  0.00002  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_012791  Vapar_4489  putative transcriptional regulator, Crp/Fnr family  24.52 
 
 
202 aa  50.4  0.00002  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  25.16 
 
 
194 aa  49.7  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  25 
 
 
254 aa  50.1  0.00003  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  25.16 
 
 
192 aa  49.7  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  23.53 
 
 
250 aa  48.9  0.00004  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  25.67 
 
 
248 aa  48.9  0.00005  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  25.75 
 
 
187 aa  48.9  0.00005  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  26.54 
 
 
194 aa  48.9  0.00005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  26.4 
 
 
192 aa  48.5  0.00006  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  23.53 
 
 
248 aa  48.5  0.00007  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  23.53 
 
 
248 aa  48.5  0.00007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  24.6 
 
 
250 aa  48.1  0.00009  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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