163 homologs were found in PanDaTox collection
for query gene SO_1586 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_1586  hypothetical protein  100 
 
 
200 aa  405  1.0000000000000001e-112  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  79.19 
 
 
202 aa  297  6e-80  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  78.17 
 
 
202 aa  296  1e-79  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  79.19 
 
 
202 aa  296  1e-79  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  71.74 
 
 
203 aa  250  8.000000000000001e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  47.19 
 
 
190 aa  178  4e-44  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  52.46 
 
 
192 aa  178  4.999999999999999e-44  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  51.06 
 
 
192 aa  172  3.9999999999999995e-42  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  41.76 
 
 
189 aa  124  8.000000000000001e-28  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  36.26 
 
 
190 aa  118  4.9999999999999996e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  35.91 
 
 
192 aa  116  1.9999999999999998e-25  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  33.13 
 
 
190 aa  112  4.0000000000000004e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  30.3 
 
 
199 aa  75.1  0.0000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  22.34 
 
 
188 aa  73.9  0.000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  29.49 
 
 
201 aa  73.2  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  22.92 
 
 
194 aa  72.4  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  30.95 
 
 
191 aa  71.2  0.000000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  26.46 
 
 
189 aa  70.5  0.00000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  26.54 
 
 
196 aa  68.9  0.00000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  29.76 
 
 
190 aa  68.6  0.00000000006  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  26.45 
 
 
175 aa  68.6  0.00000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  31.65 
 
 
189 aa  67.8  0.00000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  29.07 
 
 
194 aa  66.6  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_003910  CPS_2731  cyclic nucleotide-binding domain-containing protein  25.14 
 
 
192 aa  65.9  0.0000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.19887  n/a   
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  31.61 
 
 
175 aa  65.9  0.0000000004  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  29.94 
 
 
196 aa  65.5  0.0000000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  31.21 
 
 
196 aa  65.5  0.0000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  31.03 
 
 
203 aa  65.1  0.0000000006  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  27.91 
 
 
187 aa  64.7  0.0000000009  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  26.51 
 
 
190 aa  64.7  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  32.72 
 
 
191 aa  63.9  0.000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  25.95 
 
 
198 aa  63.2  0.000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  29.17 
 
 
192 aa  62.8  0.000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  28.85 
 
 
196 aa  61.2  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  30.49 
 
 
198 aa  61.2  0.00000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  24.86 
 
 
188 aa  59.3  0.00000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  25.66 
 
 
194 aa  59.7  0.00000003  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  27.86 
 
 
208 aa  58.9  0.00000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  27.66 
 
 
191 aa  58.9  0.00000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  28.99 
 
 
196 aa  58.9  0.00000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_013132  Cpin_6710  putative transcriptional regulator, Crp/Fnr family  25.79 
 
 
189 aa  58.5  0.00000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  25.58 
 
 
193 aa  58.2  0.00000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  27.97 
 
 
227 aa  57.8  0.0000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_009379  Pnuc_0636  cyclic nucleotide-binding protein  29.67 
 
 
205 aa  57.8  0.0000001  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3294  cyclic nucleotide-binding protein  28.24 
 
 
187 aa  56.6  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  26.16 
 
 
189 aa  57  0.0000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  26.98 
 
 
189 aa  56.2  0.0000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  27.56 
 
 
205 aa  55.8  0.0000004  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  28.09 
 
 
189 aa  55.8  0.0000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  28.37 
 
 
195 aa  54.7  0.0000009  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  25.5 
 
 
201 aa  54.3  0.000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  25.42 
 
 
185 aa  54.3  0.000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  28.14 
 
 
191 aa  53.9  0.000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  30.28 
 
 
197 aa  53.9  0.000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  23.72 
 
 
194 aa  53.1  0.000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  25.47 
 
 
202 aa  52.8  0.000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  23.08 
 
 
191 aa  52.8  0.000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  24.32 
 
 
190 aa  52.8  0.000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  24.32 
 
 
190 aa  52.8  0.000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  28.67 
 
 
208 aa  52.4  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  23.6 
 
 
197 aa  52.4  0.000005  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  24.84 
 
 
191 aa  52  0.000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2799  cyclic nucleotide-binding domain-containing protein  25.47 
 
 
202 aa  52  0.000006  Polaromonas sp. JS666  Bacteria  normal  0.208629  normal  0.300768 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  25.14 
 
 
257 aa  51.6  0.000008  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  51.6  0.000008  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  51.6  0.000009  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  51.6  0.000009  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_012791  Vapar_4489  putative transcriptional regulator, Crp/Fnr family  24.57 
 
 
202 aa  51.2  0.000009  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  20.47 
 
 
190 aa  50.8  0.00001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  23.72 
 
 
191 aa  50.4  0.00002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  22.98 
 
 
194 aa  50.1  0.00002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  22.61 
 
 
194 aa  50.4  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  27.45 
 
 
189 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  22.46 
 
 
196 aa  49.7  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  22.52 
 
 
192 aa  49.7  0.00003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_0532  cyclic nucleotide-binding protein  25.74 
 
 
189 aa  49.7  0.00003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2716  putative transcriptional regulator, Crp/Fnr family  23.93 
 
 
189 aa  49.7  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  25.43 
 
 
222 aa  49.7  0.00003  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_008609  Ppro_1835  Crp/FNR family transcriptional regulator  21.67 
 
 
250 aa  48.9  0.00004  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0256984  n/a   
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  24.03 
 
 
192 aa  48.9  0.00005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  24.84 
 
 
189 aa  48.9  0.00005  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  25.79 
 
 
186 aa  48.9  0.00005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  26.82 
 
 
227 aa  48.9  0.00005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  25.32 
 
 
200 aa  48.9  0.00005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  24.28 
 
 
194 aa  48.9  0.00005  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  54.17 
 
 
195 aa  48.9  0.00005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  27.04 
 
 
193 aa  48.5  0.00006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  21.89 
 
 
189 aa  48.1  0.00008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  23 
 
 
213 aa  48.1  0.00009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  26.26 
 
 
222 aa  48.1  0.00009  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  26.26 
 
 
222 aa  48.1  0.00009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  24.84 
 
 
168 aa  47.8  0.0001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  24.57 
 
 
254 aa  47.4  0.0001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  24.73 
 
 
244 aa  47.8  0.0001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  24.19 
 
 
244 aa  47.8  0.0001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  24.84 
 
 
194 aa  47.8  0.0001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  22.86 
 
 
244 aa  47.4  0.0001  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  22.99 
 
 
248 aa  46.6  0.0002  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  23.57 
 
 
194 aa  46.6  0.0002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  22.98 
 
 
198 aa  47.4  0.0002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
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