138 homologs were found in PanDaTox collection
for query gene CHU_3763 on replicon NC_008255
Organism: Cytophaga hutchinsonii ATCC 33406



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  100 
 
 
208 aa  429  1e-119  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  40.35 
 
 
191 aa  139  3.9999999999999997e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  39.77 
 
 
191 aa  137  7.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  41.14 
 
 
194 aa  137  2e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  31.48 
 
 
175 aa  92  6e-18  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  34.19 
 
 
194 aa  82.4  0.000000000000004  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  34.27 
 
 
189 aa  82.4  0.000000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  30 
 
 
196 aa  80.5  0.00000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
198 aa  78.2  0.00000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  32.12 
 
 
189 aa  76.6  0.0000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  30.22 
 
 
203 aa  76.3  0.0000000000003  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  27.98 
 
 
192 aa  76.3  0.0000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  30.99 
 
 
194 aa  75.9  0.0000000000004  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  29.19 
 
 
189 aa  75.1  0.0000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  29.86 
 
 
194 aa  74.7  0.0000000000008  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  35.71 
 
 
195 aa  73.9  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  28.41 
 
 
208 aa  73.2  0.000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  30.07 
 
 
198 aa  72.8  0.000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  31.34 
 
 
194 aa  72.8  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  29.94 
 
 
187 aa  72.4  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  31.45 
 
 
195 aa  72.4  0.000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  32.17 
 
 
193 aa  72.4  0.000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  30.14 
 
 
190 aa  71.6  0.000000000007  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  27.49 
 
 
190 aa  71.6  0.000000000008  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013061  Phep_3758  cyclic nucleotide-binding  31.94 
 
 
199 aa  71.6  0.000000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  27.33 
 
 
189 aa  71.2  0.00000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  30.94 
 
 
192 aa  69.7  0.00000000003  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  30.66 
 
 
192 aa  69.7  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  29.45 
 
 
194 aa  70.1  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  30 
 
 
191 aa  69.3  0.00000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  32.89 
 
 
199 aa  68.9  0.00000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  29.05 
 
 
192 aa  68.9  0.00000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  29.17 
 
 
192 aa  68.9  0.00000000006  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  29.17 
 
 
185 aa  68.2  0.00000000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  30.71 
 
 
192 aa  67.4  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  31.5 
 
 
227 aa  67.8  0.0000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  26.28 
 
 
189 aa  66.6  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  31.65 
 
 
196 aa  67  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  29.86 
 
 
196 aa  67.4  0.0000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  29.53 
 
 
195 aa  67  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  26.81 
 
 
192 aa  66.2  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  29.45 
 
 
208 aa  66.6  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  27.92 
 
 
189 aa  65.9  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_013730  Slin_0259  putative transcriptional regulator, Crp/Fnr family  26.76 
 
 
179 aa  65.9  0.0000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.0493403  normal  0.0138145 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  27.56 
 
 
189 aa  65.5  0.0000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  31.5 
 
 
189 aa  65.1  0.0000000006  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  29.45 
 
 
193 aa  64.7  0.0000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  30.61 
 
 
189 aa  64.7  0.0000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  26.11 
 
 
192 aa  64.7  0.0000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  27.71 
 
 
191 aa  64.3  0.000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0889  putative transcriptional regulator, Crp/Fnr family  28.48 
 
 
217 aa  64.7  0.000000001  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00205469  normal  0.913069 
 
 
-
 
NC_013037  Dfer_2871  putative transcriptional regulator, Crp/Fnr family  29.17 
 
 
193 aa  63.9  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00453056  normal  0.032413 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  28.57 
 
 
175 aa  62.4  0.000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  33.57 
 
 
190 aa  62.4  0.000000005  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  27.01 
 
 
188 aa  62  0.000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  31.78 
 
 
197 aa  61.6  0.000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  26.67 
 
 
168 aa  60.8  0.00000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  29.05 
 
 
202 aa  60.5  0.00000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  26.17 
 
 
201 aa  60.5  0.00000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_013037  Dfer_1119  putative transcriptional regulator, Crp/Fnr family  24.31 
 
 
200 aa  60.1  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.301792  normal  0.283785 
 
 
-
 
NC_013132  Cpin_2892  putative transcriptional regulator, Crp/Fnr family  27.97 
 
 
192 aa  60.1  0.00000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  30.72 
 
 
200 aa  60.5  0.00000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  28 
 
 
191 aa  59.7  0.00000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  26.28 
 
 
187 aa  59.3  0.00000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  25.97 
 
 
187 aa  59.3  0.00000004  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  29.11 
 
 
192 aa  58.5  0.00000006  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  28.67 
 
 
192 aa  58.5  0.00000006  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0532  cyclic nucleotide-binding protein  25.69 
 
 
189 aa  58.5  0.00000006  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  23.21 
 
 
190 aa  58.5  0.00000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  24.66 
 
 
190 aa  58.5  0.00000007  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  29.09 
 
 
194 aa  58.5  0.00000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  32.14 
 
 
202 aa  58.5  0.00000008  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  27.05 
 
 
190 aa  58.2  0.00000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  22.49 
 
 
208 aa  57.8  0.0000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  29.29 
 
 
202 aa  57.8  0.0000001  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  28.06 
 
 
197 aa  57.4  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  22.92 
 
 
187 aa  57.4  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  26.62 
 
 
193 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  28.67 
 
 
203 aa  57  0.0000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  31.15 
 
 
197 aa  57.4  0.0000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013037  Dfer_3750  putative transcriptional regulator, Crp/Fnr family  25.66 
 
 
201 aa  57.4  0.0000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.44373  normal 
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  26.53 
 
 
189 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  31.43 
 
 
202 aa  56.6  0.0000003  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  25.5 
 
 
193 aa  56.6  0.0000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_009441  Fjoh_3294  cyclic nucleotide-binding protein  30.56 
 
 
187 aa  56.2  0.0000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  24.66 
 
 
204 aa  56.2  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  25.85 
 
 
191 aa  55.8  0.0000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  26.4 
 
 
189 aa  55.5  0.0000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  24.83 
 
 
196 aa  54.7  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  27.08 
 
 
196 aa  53.9  0.000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2540  cyclic nucleotide binding regulatory protein  25.95 
 
 
211 aa  53.5  0.000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.90473  normal 
 
 
-
 
NC_013132  Cpin_1758  putative transcriptional regulator, Crp/Fnr family  25.85 
 
 
199 aa  53.9  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.972019  normal 
 
 
-
 
NC_004347  SO_1586  hypothetical protein  27.86 
 
 
200 aa  53.1  0.000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013162  Coch_0935  cyclic nucleotide-binding protein  24.42 
 
 
166 aa  52.8  0.000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0225021  n/a   
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  24.66 
 
 
197 aa  52.8  0.000004  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  26.03 
 
 
194 aa  52.8  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  28.28 
 
 
205 aa  52.4  0.000005  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  26.03 
 
 
196 aa  52  0.000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  31.47 
 
 
194 aa  52  0.000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  24.66 
 
 
189 aa  50.8  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
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