More than 300 homologs were found in PanDaTox collection
for query gene Phep_0793 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013061  Phep_0793  response regulator receiver  100 
 
 		 120 aa  249  1e-65  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009012  Cthe_1600  two component transcriptional regulator  38.94 
 
 		 224 aa  88.6  3e-17  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000237714  n/a   
 
 
-
 
NC_013061  Phep_3508  response regulator receiver  37.72 
 
 		 119 aa  86.3  1e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007520  Tcr_0541  two component transcriptional regulator  33.88 
 
 		 230 aa  85.9  2e-16  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  37.07 
 
 		 236 aa  84.7  4e-16  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_010001  Cphy_2827  two component transcriptional regulator  35.04 
 
 		 230 aa  84  6e-16  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_2563  two component transcriptional regulator, winged helix family  36.61 
 
 		 230 aa  83.2  0.000000000000001  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012917  PC1_1008  two component transcriptional regulator PhoB, winged helix family  37.61 
 
 		 229 aa  82.4  0.000000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_3302  two component transcriptional regulator PhoB, winged helix family  37.61 
 
 		 229 aa  82.4  0.000000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  35.04 
 
 		 229 aa  82  0.000000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_2266  two component transcriptional regulator PhoB, winged helix family  32.23 
 
 		 230 aa  82  0.000000000000003  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_0174  response regulator receiver  36.84 
 
 		 130 aa  81.3  0.000000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004116  SAG1961  phosphate regulon response regulator PhoB  38.05 
 
 		 225 aa  80.1  0.000000000000009  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.411469  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  35.9 
 
 		 234 aa  79.7  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_012912  Dd1591_3106  two component transcriptional regulator PhoB, winged helix family  35.9 
 
 		 229 aa  79.7  0.00000000000001  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_3276  two component transcriptional regulator  35.04 
 
 		 229 aa  78.6  0.00000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_010159  YpAngola_A3286  phosphate regulon transcriptional regulatory protein  35.04 
 
 		 230 aa  78.6  0.00000000000002  Yersinia pestis Angola  Bacteria  normal  1  normal  0.0413143 
 
 
-
 
NC_009832  Spro_1041  two component transcriptional regulator  35.04 
 
 		 229 aa  79.3  0.00000000000002  Serratia proteamaculans 568  Bacteria  normal  1  normal  0.194422 
 
 
-
 
NC_009708  YpsIP31758_3136  phosphate regulon transcriptional regulatory protein PhoB  35.04 
 
 		 229 aa  78.6  0.00000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_2915  two component transcriptional regulator PhoB, winged helix family  35.9 
 
 		 229 aa  78.6  0.00000000000003  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_011080  SNSL254_A0441  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.244741  normal  1 
 
 
-
 
NC_009436  Ent638_0867  transcriptional regulator PhoB  34.19 
 
 		 229 aa  77.8  0.00000000000004  Enterobacter sp. 638  Bacteria  normal  0.437737  normal  1 
 
 
-
 
NC_011083  SeHA_C0496  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011205  SeD_A0435  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.464381  normal  1 
 
 
-
 
NC_011094  SeSA_A0454  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
CP001509  ECD_00347  DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_3210  two component transcriptional regulator PhoB, winged helix family  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli DH1  Bacteria  normal  0.146413  n/a   
 
 
-
 
NC_011353  ECH74115_0475  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009800  EcHS_A0467  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E0318  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_0427  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_00351  hypothetical protein  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_011149  SeAg_B0435  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_0429  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli SMS-3-5  Bacteria  normal  0.283039  normal  1 
 
 
-
 
NC_010468  EcolC_3234  transcriptional regulator PhoB  35.04 
 
 		 229 aa  77.8  0.00000000000005  Escherichia coli ATCC 8739  Bacteria  normal  0.456974  unclonable  0.00000000819474 
 
 
-
 
NC_012034  Athe_1751  two component transcriptional regulator, winged helix family  34.45 
 
 		 234 aa  77  0.00000000000007  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  33.63 
 
 		 234 aa  77  0.00000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  33.9 
 
 		 278 aa  77  0.00000000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  33.61 
 
 		 237 aa  76.3  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_007778  RPB_0781  two component transcriptional regulator  33.61 
 
 		 233 aa  76.3  0.0000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.174075 
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  35.71 
 
 		 226 aa  76.6  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  31.15 
 
 		 229 aa  76.3  0.0000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_0893  winged helix family two component transcriptional regulator  33.61 
 
 		 233 aa  75.9  0.0000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  33.87 
 
 		 233 aa  75.5  0.0000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  35.83 
 
 		 235 aa  75.9  0.0000000000002  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_011138  MADE_03440  putative DNA-binding response regulator PhoB  30.77 
 
 		 229 aa  75.5  0.0000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_007614  Nmul_A2231  two component transcriptional regulator  35.04 
 
 		 234 aa  75.1  0.0000000000003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_2689  phosphate regulon transcriptional regulatory protein phoB  32.48 
 
 		 229 aa  74.7  0.0000000000003  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000627834  n/a   
 
 
-
 
NC_010717  PXO_02492  phosphate regulon transcriptional regulatory protein PhoB  31.09 
 
 		 229 aa  75.1  0.0000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.506678  n/a   
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  32.79 
 
 		 229 aa  75.1  0.0000000000003  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  33.04 
 
 		 231 aa  75.1  0.0000000000003  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_009428  Rsph17025_1924  two component transcriptional regulator  28.93 
 
 		 230 aa  75.1  0.0000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.781724  normal  0.399122 
 
 
-
 
NC_008700  Sama_1074  response regulator receiver protein  32.48 
 
 		 229 aa  75.1  0.0000000000003  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000246777  normal  0.491091 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  34.78 
 
 		 229 aa  75.1  0.0000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  1  normal  0.258551 
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  31.03 
 
 		 225 aa  74.7  0.0000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  35.34 
 
 		 238 aa  74.7  0.0000000000004  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_007513  Syncc9902_0314  two component transcriptional regulator  32.48 
 
 		 259 aa  74.7  0.0000000000004  Synechococcus sp. CC9902  Bacteria  normal  0.645458  n/a   
 
 
-
 
NC_007516  Syncc9605_2378  two component transcriptional regulator  31.62 
 
 		 262 aa  74.7  0.0000000000004  Synechococcus sp. CC9605  Bacteria  normal  1  normal  0.936352 
 
 
-
 
NC_007802  Jann_2294  two component transcriptional regulator  33.63 
 
 		 228 aa  74.7  0.0000000000004  Jannaschia sp. CCS1  Bacteria  normal  0.305192  normal  1 
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  32.2 
 
 		 231 aa  74.3  0.0000000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013162  Coch_0220  two component transcriptional regulator, AraC family  30.58 
 
 		 934 aa  74.3  0.0000000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.497584  n/a   
 
 
-
 
NC_011901  Tgr7_2472  response regulator receiver protein  30.77 
 
 		 216 aa  74.3  0.0000000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  35.04 
 
 		 231 aa  74.3  0.0000000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008687  Pden_4325  two component transcriptional regulator  33.33 
 
 		 229 aa  74.3  0.0000000000005  Paracoccus denitrificans PD1222  Bacteria  normal  0.974523  normal  1 
 
 
-
 
NC_012918  GM21_0758  response regulator receiver protein  35.85 
 
 		 132 aa  74.3  0.0000000000005  Geobacter sp. M21  Bacteria  n/a    normal  0.0540632 
 
 
-
 
NC_013165  Shel_18040  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.04 
 
 		 232 aa  73.9  0.0000000000006  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1208  phosphate regulon response regulator PhoB  31.62 
 
 		 233 aa  73.9  0.0000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007335  PMN2A_1494  two component transcriptional regulator  33.33 
 
 		 265 aa  74.3  0.0000000000006  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.213712  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  35.4 
 
 		 231 aa  73.9  0.0000000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_008819  NATL1_02001  two-component response regulator  33.33 
 
 		 265 aa  73.9  0.0000000000006  Prochlorococcus marinus str. NATL1A  Bacteria  normal  1  normal  0.824437 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  33.05 
 
 		 237 aa  73.9  0.0000000000007  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  35.4 
 
 		 232 aa  73.9  0.0000000000007  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3838  response regulator receiver domain-containing protein  34.19 
 
 		 234 aa  73.9  0.0000000000007  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.0000539223  normal  1 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  33.62 
 
 		 233 aa  73.9  0.0000000000007  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  31.9 
 
 		 229 aa  73.9  0.0000000000007  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal  1 
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  28.57 
 
 		 231 aa  73.9  0.0000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.777838 
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  32.48 
 
 		 229 aa  73.9  0.0000000000008  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_011146  Gbem_0743  response regulator receiver protein  35.85 
 
 		 132 aa  73.6  0.0000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  31.36 
 
 		 230 aa  73.6  0.000000000001  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  29.31 
 
 		 272 aa  73.2  0.000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal  1 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  31.9 
 
 		 236 aa  73.2  0.000000000001  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  28.33 
 
 		 226 aa  73.2  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.575064 
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_013456  VEA_004385  phosphate regulon transcriptional regulatory protein PhoB  32.79 
 
 		 229 aa  73.2  0.000000000001  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  32.76 
 
 		 235 aa  72.8  0.000000000001  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_007925  RPC_4918  two component transcriptional regulator  31.97 
 
 		 234 aa  72.8  0.000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.134814 
 
 
-
 
NC_013061  Phep_2119  response regulator receiver  36.67 
 
 		 120 aa  73.2  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.567157 
 
 
-
 
NC_008820  P9303_26471  two-component response regulator  30.77 
 
 		 268 aa  73.2  0.000000000001  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.889517 
 
 
-
 
NC_009485  BBta_1991  two component transcriptional regulator  31.97 
 
 		 235 aa  73.2  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  32.17 
 
 		 231 aa  72.8  0.000000000001  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_008345  Sfri_2768  two component transcriptional regulator, winged helix family protein  30.77 
 
 		 229 aa  72.8  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0176064  n/a   
 
 
-
 
NC_008463  PA14_70750  two-component response regulator PhoB  34.19 
 
 		 229 aa  73.2  0.000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013385  Adeg_1897  two component transcriptional regulator, winged helix family  33.9 
 
 		 229 aa  73.6  0.000000000001  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
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